RNA id: TU296430


Basic Information

Item Value
RNA id TU296430
length 1486
lncRNA type sense_over
GC content 0.42
exon number 5
gene id bloc1s5
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 10864285 ~ 10868787 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACTGCAATTAGCAAAATACCATTGCAGTTTTTGGCATATTGTAGGTGGTCTTTATTACTATGTCATTAAAATATAGGCTATGTTAATGACTGATAGTTTAGGTCAGCTAGGTAGCGCTTTCGCTTTCACAATTAGTTGCCAGTTAGCTAAGCATTTGGAACATTTAGCAAGTGATTAGCTAGCACTTAGTTAGTAACTAGCTAGCTGGTTGAGCTAGCTGCTCCAAAGGAGACAACTTTGATTTAACTACTAAAATTAAGGTGCCAGCAGAGTTTGTAAGAATGGACAAAATTGCTAAAGATGTGGGTGATATCCAGTCCCGACTGTTAGACCACAGACCAGTCATCAATGCAGAGGTCCGCTACTTCGTGAGAGAGTTTGAGGAAAAACGTGGACACAGGGAGAGCAGACTGCTGGAGAACCTCAATAAAATGGTTTCGGAAACAAATGAGCAAATCCTGCCAACAGATTTAGAGGGCATGCTGTCTGATGTTGTTAAACGTGGAGGCTGCTAATCACATGGCAGAGAGAGTCCAGCAGAGGGAGCTAGAGGCACAGCAGAGCATGCAGCTGCAGGTGAACATGGAGCGTTTGAAAGATGATTGGGCAGAGTTTCTAAAAGAACAGCAGAGATTAAAGGAGGAAGTGAATGAAGAGCACGCCAAGGCTGTAGGAAAACTCAGCACCAAGTACAGTGAAAAGAAGAAGGACTTGACCAGGTTTTCACTCCTCTAATCAGTTGATGTTTGCGAGGGTGGGAGTGAACAAACCTCTCTTAATACATGCTTGTGTTTGTTATGGACATAGACGTCAGTTCTGCTGCACGAAGCTATCGCCTTTGATTGATGAACTCGGCCGTTGGCATAAAACGTAGAGGTTTTGCGCCTGCACAATACTCAACATTTTCCAAATCGTGAATCTAAAAGTACGATTAACAACGAGGCATTTCACGGGCCATCAAACTCACAAAGTTTCTGTCTTTAGCGAATGGAATTTTCACGGCACCTAAAAGGTCTGGAACATGTCATTTCTAAACAAGCAATCATGTGATTGTTCCTTGGCCGTGAAGTTTTCAACATTTCAAGATTTTTAATGGATGCCTGCCTGAAGGGTGCTGATGATAAATTTGCATCTGCCTCAAGTTGAAAGGAACCTGGAGTTTAGCACCAAGGCGAGATATTCTAAGCCCTGAAAGCCAGATCATTAAATGTTAAAGGAGCCCTTCTGAGCAGGTGTGTTTAAAGCACAGCTCAAGTGTTGCAGAAACAAGCTCAAACTAAACAGTTTCCAGAACAAATCATCCCTCATCAGCTATCCAGTGTTTGGAACATTTGACCTCTGACATTAACTTTGTGTAAACCAACTGTCTGTGAAGTAACTTTCATTATAAAAGGCCTTTGCTGAAACCAATTGGAATGATCAGCAgcagctgttttttgtttgctttgCCACCTCAAATCTGATTTAAATGAGTTACAAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296359 lncRNA downstream 147491 10715085 ~ 10716899 (-) True G218986
TU296314 lncRNA downstream 199607 10633287 ~ 10664783 (-) True G218951
XR_005637955.1 lncRNA downstream 202664 10658465 ~ 10661726 (-) True LOC120552022
TU296292 lncRNA downstream 257703 10604335 ~ 10606687 (-) False LOC120552013
TU296291 lncRNA downstream 265582 10597708 ~ 10598808 (-) True G218940
TU296534 lncRNA upstream 509842 11378607 ~ 11477103 (-) True G219113
TU296546 lncRNA upstream 547967 11416732 ~ 11420755 (-) True G219125
TU296552 lncRNA upstream 572479 11441244 ~ 11445755 (-) True G219130
TU296561 lncRNA upstream 598329 11467094 ~ 11469317 (-) True G219138
TU296601 lncRNA upstream 903086 11771851 ~ 11807316 (-) False G219169
XM_039789594.1 mRNA downstream 16094 10834867 ~ 10848296 (-) True txndc5
XM_039790505.1 mRNA downstream 120922 10725062 ~ 10743468 (-) False rec8b
XM_039790504.1 mRNA downstream 120922 10725062 ~ 10743468 (-) False rec8b
XM_039790506.1 mRNA downstream 120922 10725062 ~ 10743468 (-) False rec8b
XM_039790503.1 mRNA downstream 120922 10725062 ~ 10743468 (-) True rec8b
XM_039790535.1 mRNA upstream 17775 10886540 ~ 10895407 (-) True eef1e1
XM_039790557.1 mRNA upstream 75327 10944092 ~ 10956895 (-) False slc35b3
XM_039790558.1 mRNA upstream 75327 10944092 ~ 10956578 (-) True slc35b3
XM_039790927.1 mRNA upstream 256368 11125133 ~ 11210500 (-) True ofcc1
XM_039790009.1 mRNA upstream 453837 11322602 ~ 11336390 (-) False tfap2a
TU296313 other downstream 194863 10577399 ~ 10669527 (-) True G218950
TU295702 other downstream 2433460 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 2668511 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 3522495 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 3561623 7302696 ~ 7302767 (-) True trnaw-cca_33
TU296891 other upstream 2320888 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 2819656 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 2956028 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 4177383 15046148 ~ 15048663 (-) False xkr9
XR_005637989.1 other upstream 4670869 15539634 ~ 15553054 (-) False LOC120552366

Expression Profile