RNA id: TU297468



Basic Information


Item Value
RNA id TU297468
length 1077
RNA type TUCP
GC content 0.48
exon number 4
gene id xkr9
representative False

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 15045160 ~ 15049776 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTCACAGTGTTTGTCATTGGGGTGGAGCCTATCACAAGTTTCAAGGAATGAGAAGTGTGAATCAGCAGTGTTTGCCTCTGTGACTGTACACAGCCGTCTAACATGAGCAAAGAATACTGATTGACCAAAATGGCACCTGAATGTCTGGGGTCCAACACAAAACTGTCCACAGCAGCTTTTCTTCAGAACCTTCAAAGCaaccacatttctacatttatcaCAGAGTGAAACCTTTGGTTGAACTTTTCAACTGATGACAAAATGCCTCCGTTGAGCATTCAGTACACTAAACAGCGATGGTTATTAACCATTGCTGGACTGTTCTTGTACGTGGTGGACATTTGGACAGACATCGGGCTGGCACTGAAATATTATCAAGAGAAACATTTTGTGTGGACTGCACTGACTCTGGTGTTTGTTCTGGCGGGGGTGCTGGTGACACAGATCTTCAGCTACACCTGGTACAGGGACGACATGAATGGTCCTCTGGTGAACACTGTGGGAGGACCAAACATATCAGGCACGTCCACAGGTGGACTTGCTGTCCTGCACCTATTTGGCATGGGCATCTTCACCAGGTATTATCACCTGCTAAGGGAAGGCTTCACAGTGGTTTGGACAACATCACATTCCTATACAGAGGAACAGAGAAGAGATGTGCACCAAAATCTGTTTTGCCTGGCGACAGATCTGAGCATGCTCAAGCTGCTTGAGGCTTTCTTGGAGAGTGTTCCCCAACTCCTTCTGCAACTATACATAGTGATGGGCCAGAATGAGTGCTCACTCATTCAGTATTTCTCTATGGCGTTCTCCTTCTTTAACATTGCCTGGGCCCTGGTTGACTATCGCCGCTGCCTGCGCAGATCCCTTCCCCACGTCAGTGAGATGCCCTCTGGCCTCCCCACAGCAATCTACCTCCTCTACAAACTCTGCACCATCACCAGCCACATCCTCAGCTATGCCCTCCTCCTCATACTGAGCCCCTATAGCACAATAGCCCTCACCATCGTCTGGTTTCTGGCTACAATCTGGACGCACATGCTCCAGACCAACTTCTGCTCATCCGGTAAACTTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU297422 lncRNA downstream 134675 14909362 ~ 14911473 (-) True G219802
TU297411 lncRNA downstream 172492 14861491 ~ 14873656 (-) True LOC120552749
XR_005638065.1 lncRNA downstream 173714 14861482 ~ 14872434 (-) False LOC120552749
TU297409 lncRNA downstream 314314 14729932 ~ 14731834 (-) False kcnb2b
TU297376 lncRNA downstream 344831 14697178 ~ 14701317 (-) True G219765
TU297530 lncRNA upstream 255078 15303741 ~ 15304032 (-) False c22h8orf34
TU297529 lncRNA upstream 255648 15304311 ~ 15304517 (-) False c22h8orf34
TU297620 lncRNA upstream 504598 15553261 ~ 15632850 (-) True G219939
TU297676 lncRNA upstream 605868 15654531 ~ 15655412 (-) True G219982
TU297675 lncRNA upstream 605937 15654600 ~ 15655412 (-) False G219982
XM_039790412.1 mRNA downstream 218324 14731120 ~ 14827824 (-) True kcnb2b
XM_039789710.1 mRNA downstream 318748 14721960 ~ 14727400 (-) True terf1
XM_039789711.1 mRNA downstream 318749 14721961 ~ 14727399 (-) False terf1
XM_039789707.1 mRNA downstream 350936 14684548 ~ 14695212 (-) True rdh10a
XM_039789438.1 mRNA downstream 522823 14517869 ~ 14523325 (-) True gdap1
XM_039789814.1 mRNA upstream 160058 15208721 ~ 15301046 (-) False sulf1
XM_039789816.1 mRNA upstream 160058 15208721 ~ 15301015 (-) False sulf1
XM_039789818.1 mRNA upstream 160058 15208721 ~ 15301015 (-) False sulf1
XM_039789810.1 mRNA upstream 160058 15208721 ~ 15301015 (-) False sulf1
XM_039789815.1 mRNA upstream 160058 15208721 ~ 15301015 (-) False sulf1
XR_005637996.1 other downstream 1105767 13824793 ~ 13940381 (-) False sema5a
XR_005637977.1 other downstream 1349407 13688421 ~ 13696741 (-) True pdk3a
TU296891 other downstream 1852107 13189653 ~ 13194041 (-) False bmi1a
TU296313 other downstream 4376621 10577399 ~ 10669527 (-) True G218950
TU295702 other downstream 6615218 8430464 ~ 8430930 (-) True G218471
XR_005637989.1 other upstream 490971 15539634 ~ 15553054 (-) False LOC120552366
unassigned_transcript_1415 other upstream 502957 15551620 ~ 15551692 (-) True trnar-ccg_2
unassigned_transcript_1416 other upstream 596695 15645358 ~ 15645430 (-) True trnaa-agc_30
TU297839 other upstream 920081 15968744 ~ 15973636 (-) False si:ch211-140b10.6
TU297855 other upstream 955216 16003879 ~ 16004764 (-) True G220117

Expression Profile