RNA id: XM_039789662.1


Basic Information

Item Value
RNA id XM_039789662.1
length 4228
RNA type mRNA
GC content 0.48
exon number 15
gene id c22h8orf34
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 15302985 ~ 15360316 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCATACTTGCGATGAACACCGAGAGGGCAAGGCTGAGCCAGGCGGATAAATGGGAGTGGCGGTGGCACCGTTAACTGCTGGTAGCCAGTGAGCGGAAGATTTGTAATCTCTGTCACCGAGCTGCCCTGCCATTGGCTTTTACGGAGAAGCTGCCGCCAGAGAGTCAGTGAGGCGACAAACTGGGAATGGTCCCGGGCTGAGTCTCCACAATGAGCCGGGCTCATAGCCGCCTGCTCCACACTTGACGCAAACCGTCTGAACTTAACGTGGCTCCGCTGCAGCCACACTACACTTGGGACATTTTGCCTATTTTAGTCGCCGAGACGCTTTTTGAAGGACGACTGACATCGCCTCACCTTATGATTTCATTCTGCTAAAGCTCTTGCGAGGCACAACAGTTTCTTCATGGCGTCTCCACAACAGTCAAGAATTCAGTCGTATCTGGAGAAGAATAAAATCGGACCCTTGTTtgagGAGTTGATGACCAAATTGATAACTGAGACTCCCGACCATCCAATCCCTTTTCTCATTGATCACCTGCAGACCAAGCAAGACAGCCCTGGCAAACTGCACAGAGCTCTCTCTggctccgcagcactgtgggcGCAGAGCTCCCCAGAAAGCAAAAACCCTCGAAGGGAGAACAGCAACTATGAGAAGCCATGGCAAATTCACCCAAAGAAGCCGAAAAAGTCCAAGAGCGACCTGGCTGTTTCGAGTATCTCTCCTCCTTCACCAGAATCCAAGTCttTGCCACGGTCAAACCAGTACCCATCCTGGGAATGGAGAGAGAGCCGTGACTTTGATGAGCTCAACCACATTCTGCAGGAGAGCAAGAAGCTGGGCAAGGCCCTGGAGAGTCTGTCACGCAGCATTGCCATCTCTGATGAGCTTGACCAGAACTTGGGATGCTATAACTCAGTGGTGCGCCCCCGGGTGGTGGGGGAGTGGGTTGGTCGGGAAGAAGAGGACGCGGACCCCCTGGCTTCTGAGATGCTGCAACCCCCCGTCCCTCGGGCTAAAACTGAAGTGTGCTGGAGTGGAGACAGCAGCCCTGCTGGGAGCCTGAAGATGGAAGCAAAGAGCAAAGGGCTaagggagcagcagcagcatcacaaAAAGCTCCTGGCAGCCATGTTGTCCCAGGACTCCTTTGATTCTGTCCATAGCCCTGTCCCCTCCGTCGcagaggaagagatggaggaCGATGCCATGGAGCTTCTGGAGGACCTGGATGACCTGCGGATGGAGGGTGTGACGGGCTTGGCTCCATCTGGCAGTAAGTTCAGCCAGGGACGCAGCTCCTATCATACTGAACCGCAGGCCAAAGTTACACTCAACATCTGCTCTAGGTGTGCCAGGTTGCAGGGGGACAGTCTATCAGACGGCAGATCTGAAGAGGAGCACAGGCCTTACATATCTGAACAAGCTGTACCTGACATCTCCTCTCCATTGCCCGGGGTGGACACAGTGGCGGGACGGTTTCAGGAATGCGAGGCCTTGTCTCAAGTGTCAGGCTCTCGTCAGGCTGTCTGGGAGGCTGATCTGAAGGCTGTGAGAGGTGGGAGCTCTGTCGGGCAGACGGGTCTGCTACTGGGTGACTCCCTCTTTTCTAAAGAGCTGGAGAACATGGGCAAACAGCTTGCTGAGGTTGAGAAGGACCTGGCCAAGCTGGCAGAAGTAGGGAAGATGACCACTCGGAGTTCCAACAATCCGCACAGTAGTCTGCTCCACACCCCTCTGCGTCACAGAACACTACCCGACACACTTCCTCTCACCAGCTTGCTCTCTAGACCCCAGTCTCCAGCAGGCAGCCTCTCAGGCAAGCCCTGCGGTGTGGGCCTCCCTCAGCTCAGCCCCAAGCCCACCTCCCTGGTCATGGGTCGGACTCAATCTCCCAGCAACCCTGGGAGCAGGACTCAAACCCCCAGAACGCCCAGCAGGCCCCTGACCCCAAATAGTTTACTGACACGATCCACCTTCAACCCTGGATCTCATAAAGAGGTGACGTTCAGGAGGTCACGGAGCCGCCCTGTGACACCCACATGTCAGCCCACACGTCCCCGACCGCTGCTCACCCCTCCTGGCCTAAGCACTACAGACAGCCTTGGTGCCAGCCTACGGGCCTATCTGTCTGAGGATGAGTTTTACCAGCAGTTACAGGCCATCCGACAGCCTTGGCATATTCCCAGTGACACAGACAGTGACATCCTGGAGCCTCCTGAACAGGATAAGAgtGGTGCACGAGATGCCAATAAGAGATCTGTGTTTTCAGGCCTATAGTGACGAAGACCAGAGACATTGATCCAATCAAACTATTATGCAAACCACTGgacattttgaatatgtgtacagagacaattatttttgtaattcatacgaatgggggggaaaaaaagatgatATACTTTTTCACAGATATTTCATAGACATTGTACTGTAACTGTATGATGAAATGTCAAACtagtactttttttatttttgtttgctcTATAGCATGCTATTGCACTTCCATGTGGAGTCCAGAAACggatacattttgtttgttgttgacaAACTTTTTCTAGGCCTAGTGCATATTCACATTGTGGGGGCAGAACACACATGTTAAAGTGTTTATTGATATGCACTGTTAAAAGATGTAGTGTTTTTCAAAATAGCAAATAGTTGTAGAGGGAATACAAGGAATGCTGTtatattaattaaaatgatttggTGCACATTTTGACACTAATGCTATGTGCTTACTTTTTCAATTCAGATCtttctcattaaaaaaaaacaccctgaaGTCATTATTTAAATGACTAAAGCTGTCATAACCCAGGCTCTGTTTAATCCAGTCATTCCCAGATACATGATCCATCGAACTTTGTGTCTCTCAAATGTACTTTGGTGCtgacaaagacacagaaatctGTTCCGACCATGACTACATTGCTCCTGTGTGTTTGCCTGGGCACGTGTTGGTTAAACTGTGGTTGTCTGAGTGTAACACAGGCAACGTCGGctccagaaacacacacaccatggaCACACCCTCAAGCCTGACACGGTCTTATCCCTCCATTCGAACCCTATTGAGTTTTGTGGTGTGGAATACCCAACTTTTCAGTCTGTCTCTCGGGATGTGGTCAACAAACTACCCAGCTCTCGCAGTCCAATTTCACTAAGGGTGATTCCTGTAAAAGTATGTGTGAGAAGACTAATCACTTAAAACCCCATTCTGTAAAACATGGTATGTGGATTAAGGTCCCATGTATTTCAGCACACCATGTGCTCATTGGAAAGGGATGTGGTTTTGAAAGATCTGGGGAAGAATTTGAGTACATGGCATAATCAGTGGTGCCTTGGTATAATGTTTATATCACTATAAACAATATTTTCCTGTCAGAAAAGGCAAATGTATTGCATTCCTTATTACAATTTTCACATTTCATATTCTATTTTCACTTTGTTGGAGTTGGGAGTGTGATTGCCATCTGTTCTTGTCACCGATCACCAGTGCTACAACTTCGTTTATACTGTCAATATTTTCTCTGAGTTCATATGTCTCCTCCAGTCTATGTCAGCAAAATATCAAGGCATGAGGAGTTCTGGAATAAGGCGAGACAATTGAAGATGAAGACTTAAATTACTGCCACAGATGTCACACAAAGACTGCGCTCTGATGCTTTTCCCCCTCTCTGTGTATCTTTGAATGTCTCCGTATGTCACAACTTATAAAGATGAAATGGCGGGACTATTACTGATACCTCTTCTCGCCACAAGTTGCATATCATATATGAGATTATATCCATATGACTTCTTAATGATTAGTTCAAAGATGAAAATTAATTTGATGCTGCTCCTATATAATCTTGATCTTTATAATCAACATCTGTCATGTTGAGAATCCGAGAGATCATAACACGAATGCCATCTCTCTGGTGTCTGAAGTAGGAAACCTCCAATATCTTCTTAATGTATGTTTACTGTGCAGGCTTTATACACCAGGCCCATTCAAAGCAACTGCAAGGGCCACCCAGGAATAGCGGCAGACATCACTGTACTTACAGGGAGCTCTGGACCACCATCAATGGTCAGCAGACTGACCCAGGTCTTAATTTACAACTGAACAGACTGGGATTTATCCTGACGTACAGCACAAATATATCTATGGTGGAAAAGAGGTATGCTTTGAAGGCATATAAAGTCAGTATCGTTCGCTGCTTGAAATGGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297422 lncRNA downstream 391512 14909362 ~ 14911473 (-) True G219802
TU297411 lncRNA downstream 429329 14861491 ~ 14873656 (-) True LOC120552749
XR_005638065.1 lncRNA downstream 430551 14861482 ~ 14872434 (-) False LOC120552749
TU297409 lncRNA downstream 571151 14729932 ~ 14731834 (-) False kcnb2b
TU297376 lncRNA downstream 601668 14697178 ~ 14701317 (-) True G219765
TU297620 lncRNA upstream 192945 15553261 ~ 15632850 (-) True G219939
TU297676 lncRNA upstream 294215 15654531 ~ 15655412 (-) True G219982
TU297675 lncRNA upstream 294284 15654600 ~ 15655412 (-) False G219982
TU297686 lncRNA upstream 315943 15676259 ~ 15680853 (-) True mtfr1
XR_005638019.1 lncRNA upstream 341603 15701919 ~ 15702871 (-) False LOC120552505
XM_039789814.1 mRNA downstream 1939 15208721 ~ 15301046 (-) False sulf1
XM_039789816.1 mRNA downstream 1970 15208721 ~ 15301015 (-) False sulf1
XM_039789818.1 mRNA downstream 1970 15208721 ~ 15301015 (-) False sulf1
XM_039789810.1 mRNA downstream 1970 15208721 ~ 15301015 (-) False sulf1
XM_039789815.1 mRNA downstream 1970 15208721 ~ 15301015 (-) False sulf1
XM_039789665.1 mRNA upstream 279 15360595 ~ 15457218 (-) False prex2
XM_039789663.1 mRNA upstream 279 15360595 ~ 15457218 (-) True prex2
XM_039789664.1 mRNA upstream 279 15360595 ~ 15457217 (-) False prex2
XM_039789666.1 mRNA upstream 30359 15390675 ~ 15457219 (-) False prex2
XM_039790381.1 mRNA upstream 178887 15539203 ~ 15553049 (-) False LOC120552366
TU297468 other downstream 254322 15046148 ~ 15048663 (-) False xkr9
XR_005637996.1 other downstream 1362604 13824793 ~ 13940381 (-) False sema5a
XR_005637977.1 other downstream 1606244 13688421 ~ 13696741 (-) True pdk3a
TU296891 other downstream 2108944 13189653 ~ 13194041 (-) False bmi1a
TU296313 other downstream 4633458 10577399 ~ 10669527 (-) True G218950
XR_005637989.1 other upstream 179318 15539634 ~ 15553054 (-) False LOC120552366
unassigned_transcript_1415 other upstream 191304 15551620 ~ 15551692 (-) True trnar-ccg_2
unassigned_transcript_1416 other upstream 285042 15645358 ~ 15645430 (-) True trnaa-agc_30
TU297839 other upstream 608428 15968744 ~ 15973636 (-) False si:ch211-140b10.6
TU297855 other upstream 643563 16003879 ~ 16004764 (-) True G220117

Expression Profile