RNA id: TU297865



Basic Information


Item Value
RNA id TU297865
length 334
RNA type TUCP
GC content 0.54
exon number 3
gene id G220124
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16064670 ~ 16065221 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGCcggtgtgtctgtctctgcgtAGTACATCTCCTCATCCCAGTTGATGAAGAGGGCCTGTGTGAACTTGACCACTTCCAGAGTGACCAGCAGGCTGATGGGGATCAGGTTGTTGTACAGGATGATGAACGTCAGCAGGTTATATGCAAAGTTAGTGGAGATGTCACCAGCCCGGGACAGGTACCAGCAGGACTCTTCAGTATGTTCTTTGTTCCAGATGGCGGCACCCACAGAGCTGATCAGGGCCATGACCAGCAGGATGCCAAACAAGACCAGGATCTGCATGTTGGTCACCCGCTCCACATTAGAGCGTTTCAGTGGTGCCTTGGTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU297767 lncRNA downstream 130401 15881506 ~ 15934269 (-) False G220048
TU297766 lncRNA downstream 130401 15911700 ~ 15934269 (-) True G220048
TU297744 lncRNA downstream 130856 15857651 ~ 15933814 (-) True G220031
TU297760 lncRNA downstream 193376 15870720 ~ 15871294 (-) True G220042
TU297713 lncRNA downstream 287767 15773679 ~ 15776903 (-) False LOC120551922
TU297931 lncRNA upstream 52732 16117953 ~ 16118588 (-) True G220171
TU297964 lncRNA upstream 143037 16208258 ~ 16209541 (-) True G220203
TU297972 lncRNA upstream 199356 16264577 ~ 16264785 (-) True G220211
TU298013 lncRNA upstream 272597 16337818 ~ 16339037 (-) True G220243
TU298026 lncRNA upstream 299983 16365204 ~ 16366613 (-) True G220254
XM_039789937.1 mRNA downstream 25833 16030459 ~ 16038837 (-) True cdk8
XM_039789758.1 mRNA downstream 35523 16014648 ~ 16029147 (-) True wasf3b
XM_039789759.1 mRNA downstream 41969 16014613 ~ 16022701 (-) False wasf3b
XM_039789757.1 mRNA downstream 64129 15997075 ~ 16000541 (-) True rpl21
XM_039790513.1 mRNA downstream 73282 15988154 ~ 15991388 (-) True gtf3ab
XM_039789448.1 mRNA upstream 38907 16104128 ~ 16111485 (-) True LOC120551886
XM_039789580.1 mRNA upstream 104758 16169979 ~ 16180202 (-) False LOC120551982
XM_039789581.1 mRNA upstream 104758 16169979 ~ 16180202 (-) True LOC120551982
XM_039789587.1 mRNA upstream 115219 16180440 ~ 16184405 (-) False naa50
XM_039789586.1 mRNA upstream 115219 16180440 ~ 16184404 (-) True naa50
TU297855 other downstream 59906 16003879 ~ 16004764 (-) True G220117
TU297839 other downstream 91034 15968744 ~ 15973636 (-) False si:ch211-140b10.6
unassigned_transcript_1416 other downstream 419240 15645358 ~ 15645430 (-) True trnaa-agc_30
XR_005637989.1 other downstream 511616 15539634 ~ 15553054 (-) False LOC120552366
unassigned_transcript_1415 other downstream 512978 15551620 ~ 15551692 (-) True trnar-ccg_2
XR_005638013.1 other upstream 201082 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other upstream 201082 16266303 ~ 16284732 (-) False drd3
XR_005637973.1 other upstream 717848 16783069 ~ 16795124 (-) False LOC120552205
TU298248 other upstream 809428 16874649 ~ 16875300 (-) True G220412
TU298817 other upstream 2545015 18610236 ~ 18631475 (-) True G220833

Expression Profile