RNA id: TU298029


Basic Information

Item Value
RNA id TU298029
length 2292
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G220257
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16447930 ~ 16450221 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttactttttctttcaccatattgtatatttttaaataattcaatTCATAACGTTTGAGTGAAACAATGTCAAAGTTTTATGGCAAGTTAAATGTCCTGCCAAGACAACATACACTGTACAACAAaattaatcataataataaacaaaactattattttaaaaCTATGAAGTGTCCTTGTACACAAATGTGAACCTAAGCTAATACAGTACATTTGTAGCTTCACAATAGCATGTATTGCACCAGTGTTACTTGCATTGCACTAACAACTATTACATcttaaatacacaacacaaaatcCAGTTTCCAAATAAACAAATCTATATTACACATGCTTCACTACTGAATACTTACTGTAAGTGCACATTAGAATGATTGTTGATTCaatatcactttttaattttATCTCACTGATACAAAAACAACCATGCCAGGTCACCAAAACACTAAAAGATAATATCTAGCAACACCTGTGActacatttgaaaacacttttTACTAGTATTGTTTCGGTGTGTACAAATCTATTTACATTCACCATTATGAGGTACATTAGTAaattttacattattacatttatattacaTTAACCTTTactgacaacagaagacagGCACCAAACAATGTGGAACAATGAGTCTTTAAaacgcttatttgctttcttgccgagaatGTAATGAGAAGATAGATATCACTCTCCTATCTGTACGCTAAATACGAAGTAGCTGGTTTGCTTAGCTTTGCgcaaagactgaaaacagctgtCCAAAGGTTAAGCTGACTGACCCATTATATTTTGTTGGTTGTGTAAAACTGAAAAGTTGCAGTTAGCTGCTGGTTGCTTGGAAACCTCACCATGATGACAGGACTTCACAAGAATGAGATATAGCATTTTAAGTAGTGAGCTTTTGATGTGCTgataggtggattttgttactttGGAAtaaggctagctgtttccctgcTTGGAGTCGTCATTCTACGCTAAGCCAACCGGCAGTGGCATCCATCGTCTCATGTGTTCACCAGAAAGTGAATATTTCCAAACATGTATTACTATTCCTTTAATCTTTTGTCAACAGCAAAGCATCCTATATGAAAGCATTTACCAAGAACAACATGAGCATTTGTTGTTCTTTAATTTCACATGTTGCTCTGTAGCAGTCTGACCCTTTAAATCTGCGGCATGTTGagattatgtgttttttttttttgctggacCTTCTGTATGTTCCTTCTTGCATTAACATGCAAGTGACTTTCAGGTCTAACCTTATAATCTTAAAAAGAACAATGATAGCATCGTTGTGACAAAGGACCGGTCATCATCGTCACCTTGCTTTGCTTTACATACTGGCTCCGGTAGTCTCTATGGACATGTCAGGTTTGAACTCCTCCAGGGGAGAAGTTTAAACTCGACAACTCAATGGCGAATTCAGGAAATATTTATCACAATGGAGGCTCTACCAAAGCAGCACCAAGAGAGCCTCTCTACAAGTCTGAGGACTGCTTTTAAGTGTAGTTTATTTAGCTGTTATGCTTAGCATTGAGCCACAGACTGCTATATAAACAAGCTCGTACAAGAGAATTTTATGTTCCTGGCGAGGCTTTAAATCCCACGTTGCAATAACatgaacaaaaaacaatgttattACTAATATTGTAGCCACAATGCAATATGCATGGCACAACAATCCATAGTAATTCATTTTCTTTGCACTGTTCTTTGTACAATGTTAAATGACTTCTCCAAAGTAAACGTAAACACTCAAGGACTGAATTGCTTAAAGGCATTTCCTCTCCAGAGCAGCCGACTGCCAGTAAAGATCTGAAAGTGCCACTTTAAAACACTGACACCAGGCACTCTGTAGTGACTGGCACAAAACTGCCACAGTgcctcaaataaaaaaaataaaaaattatcacAGGCTCAGAATCACACGTAACAAGAGGGAGGGCTGTACTGATAAAAGGGAAGGCAAAGGGCAATCAGTCTCTAGTGATAGTGATAGTGCAGAGAAGGGCATTTATACTCCAAACCCATCATTGTGAATCAGCATCACACCGGTCACCCGGTCTGAAGCCTCATCCGTTTGGCATTTATGGAAAACGGTTCCTGCTGGTTATCAGCCATTTTCTTCTGACACAATGAGGAAAACAAAATTGTTACACactgttttgttctttttggttGCCTAAAAATATGCTTAAAAATTTATTTTCGATCACTACGCACATTCAAACGCACACCCATAACGTATTCCTGGTACTTTTCTTTGCCTGTGATGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298026 lncRNA downstream 81317 16365204 ~ 16366613 (-) True G220254
TU298013 lncRNA downstream 108893 16337818 ~ 16339037 (-) True G220243
TU297972 lncRNA downstream 183145 16264577 ~ 16264785 (-) True G220211
TU297964 lncRNA downstream 238389 16208258 ~ 16209541 (-) True G220203
TU297931 lncRNA downstream 329342 16117953 ~ 16118588 (-) True G220171
TU298063 lncRNA upstream 22027 16472248 ~ 16477515 (-) True G220272
TU298062 lncRNA upstream 24340 16474561 ~ 16477515 (-) False G220272
TU298066 lncRNA upstream 29162 16479383 ~ 16481158 (-) True G220273
TU298100 lncRNA upstream 96707 16546928 ~ 16548724 (-) True G220300
TU298198 lncRNA upstream 244366 16694587 ~ 16701557 (-) True G220373
XM_039790932.1 mRNA downstream 101858 16339112 ~ 16346072 (-) True kpna1
XM_039789827.1 mRNA downstream 114103 16328173 ~ 16333827 (-) False mix23
XM_039789828.1 mRNA downstream 114829 16328173 ~ 16333101 (-) False mix23
XM_039789826.1 mRNA downstream 114846 16328173 ~ 16333084 (-) True mix23
XM_039790562.1 mRNA downstream 160249 16286497 ~ 16287681 (-) False si:ch211-161h7.8
XM_039789654.1 mRNA upstream 8112 16458333 ~ 16464016 (-) True sec22c
XM_039790160.1 mRNA upstream 63971 16514192 ~ 16517938 (-) True klhl40b
XM_039789532.1 mRNA upstream 68821 16519042 ~ 16527050 (-) True hhatlb
XM_039789465.1 mRNA upstream 77443 16527664 ~ 16534798 (-) True LOC120551893
XM_039789927.1 mRNA upstream 151408 16601629 ~ 16621681 (-) False plcd1a
XR_005638013.1 other downstream 163195 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 163198 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 382709 16064670 ~ 16065221 (-) True G220124
TU297855 other downstream 443166 16003879 ~ 16004764 (-) True G220117
TU297839 other downstream 474294 15968744 ~ 15973636 (-) False si:ch211-140b10.6
XR_005637973.1 other upstream 332848 16783069 ~ 16795124 (-) False LOC120552205
TU298248 other upstream 424428 16874649 ~ 16875300 (-) True G220412
TU298817 other upstream 2160015 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 2174505 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 2488778 18938999 ~ 18949481 (-) False mettl4

Expression Profile