RNA id: XR_005637940.1


Basic Information

Item Value
RNA id XR_005637940.1
length 1394
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120551964
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 17115230 ~ 17398235 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCGAAGAAGACATTTCACGCCATATTTGAATTTGACAGGTTGTTTTGGCGTTAATTGGACTTTCCTGAACTCTCTTGCAATAAGACTTATTTTTGTTAATTTACTGACGTACGATATCGATTGGATTTCTGCCGAATTGTTGCTGAGATGTAGCCTACACCTAGCTGTCCTTTCAACACTTATGTGATAAACAACTTTGCTAGCAGATAATGCCTAAAAACAGCTGCTTCACTAGACTGTTGCCTTTAAGGACCGACGGCCATGACCACTTCAGGCTTCAAAACTGATGAAAAACACCCAGCATGCGACGTCATAAAGGATCTTATTGTGAAGGAGGATTTTTAAAGAATGAACTTCGTGTAGACCCGCCAAGAAGACCTTCAAATACATGGAGGGGAGACTCATCTCGCACTCAAATATCTCCGTGGGGAATGGAAAGATGGCAGAGATGCATGCCGAGGCCACTCCTTTTATCCGGGCCTCAGAAAGAGAAACATTGGCACAGTTGACAgggaaaatgtgacattttctgCACTGTGATACCTCACATCTTCAAATTGATGCCTTGTCGGAAATAGACAGAAGGAGGCGTAATGAATGTGCTTCGGTGACACAAAGACACGCCACCAGGACATTGTGGGGTCTCTGCTCTGGAGCATTCTGGCTGGTTTGCTTTTTAAAGCACAGAGGGCCAGCTGTTTATGTTATTCAAATTTAGAGCAGTGGTAGAAAATGTGCGTCCATCTACTGTAGCGGGGGATAATAGTTTGGACAAATGCATCCATTTCGAAAACCACTTTTTATGCTATTTCAGTCAATCAGACGACATTTGAAAGTATTTTCTGTGACACTGCTTGAATGTCTCTTTATATGCAGCTGAAACTTGGATAAAAGATTCAAATGATTGTCATTTTCTTCAGTATTCACGCTGTCATCTCCACATAGCGACTGAATCATTTGTCCTTTGGTTGGAGACCGTGTTACTCTATGTGTGGCGTACAAACAGACTCATGGGAGGTCATGGGAGTTCTGTGCTGACAATCAAGGGACCAGCTGTCACTCATAGCCCCATCACCAGCACAACTCAATGGCTCATTTCTGgcacatttctctttttttggcaGGTATATATCAGCGTGATGGATTGGCATTAGAGAAAATCTTTCATCAAGACTCAAATATAGTCCTAATCACCCTCATTGTGAGGCATGAAGGCACTTGCACGTTTTATTATAGAAAggttacatactgtatgtatgtatagatCAGATGAGCTACTACCCCGTGTTTGACACCACCCGTCTTGTTCCAAACATGTTCATTTAATGTGAATGTCATTTAAcactatgaattaaatatgacTACATGTATTTGGATTAAATCTATCCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298291 lncRNA downstream 242530 16898189 ~ 16898537 (-) True G220445
TU298288 lncRNA downstream 253043 16887256 ~ 16888024 (-) True G220443
TU298209 lncRNA downstream 395655 16742287 ~ 16745412 (-) True G220382
TU298198 lncRNA downstream 439510 16694587 ~ 16701557 (-) True G220373
TU298100 lncRNA downstream 592343 16546928 ~ 16548724 (-) True G220300
TU298487 lncRNA upstream 153527 17551760 ~ 17552963 (-) True G220611
TU298607 lncRNA upstream 512286 17910519 ~ 17910741 (-) True G220665
TU298601 lncRNA upstream 526338 17924571 ~ 17924957 (-) True G220659
XR_005637975.1 lncRNA upstream 541025 17939258 ~ 17972500 (-) False LOC120552218
XR_005637976.1 lncRNA upstream 541025 17939258 ~ 17972500 (-) True LOC120552218
XM_039789561.1 mRNA downstream 41388 17096251 ~ 17099679 (-) True zic1
XM_039789562.1 mRNA downstream 41389 17096251 ~ 17099678 (-) False zic1
XM_039790698.1 mRNA downstream 146490 16987809 ~ 16994577 (-) True agtr1b
XM_039790697.1 mRNA downstream 146491 16987809 ~ 16994576 (-) False agtr1b
XM_039790696.1 mRNA downstream 153382 16979924 ~ 16987685 (-) True cpb1
XM_039790403.1 mRNA upstream 20396 17418629 ~ 17446009 (-) True dipk2ab
XM_039790101.1 mRNA upstream 114551 17512784 ~ 17516181 (-) True chst2b
XM_039790495.1 mRNA upstream 134833 17533066 ~ 17542989 (-) False pcolce2b
XM_039790497.1 mRNA upstream 134833 17533066 ~ 17542857 (-) False pcolce2b
XM_039790498.1 mRNA upstream 134833 17533066 ~ 17541394 (-) True pcolce2b
TU298248 other downstream 265767 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 345943 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 856332 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 856335 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 1075846 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 1212003 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 1226493 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 1540766 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 1917358 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 3438064 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile