RNA id: TU298686


Basic Information

Item Value
RNA id TU298686
length 5440
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G220732
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18207365 ~ 18214389 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAGCATTTATTGGTAGGAGTCCATAAAAAATGAACATTTTTCAGACATTTCTACATTTCCACTCACAGTAATCAAGAGAACAACCTGTCAAGGACAAATTTAGATGAGAGAAATCTTATTTTGTGTTAGAAATACTTTACAAAAACACCCAcgaaaggttaacacattgcTGAATCCACTCAGTAAAAAGAATcctacaaaaaaagaaaataactttGAAAGGGTTTAATAGCTATTTTTCACCCTGTGGGAGTAGTGGTAAAAGAGTGGATAATGTTGCTGCCAGAGTGTTGATTGTCAGTTTTCATGTGTGATGGAGGAGTGAGCAGAAAATGTTAAtttctttctgtaataaaactcACTCTTCAGTGCTTTCATTCTGCTTTAGAGTACTCTCACATTCCCCAgatgtccctctctctctccttgtctctatTGAGAAAGGATCCACTGAATAGCTTGACCTTCACTTATTCTCACATGCTACACAGTATTACTGCAGTCATTTTCATGCTCATCATAAACTAATTATCTTTGCACCTGAACTCTGTCAAACACACTTTCTGAAAATGTGTGCTGTAAAAAGTCCAATCATAGGAGATTAATTTAAGTTCTGAATGCCCACTGTACATCCACAGAGCCCACCCACAATACATACAGCAAAAGCTTAACTACTAAAAatgttggacaaaacaaaacattgaagTACTAATACTAATGTCACATATGATGATACACATTGATtgcacttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcatgtgtgttgtgtgttgtgtctgtgcctgtTGGTGATTAATAAAAGGCACCAAGTCCACAACAGGCGAAGTGTCGGGGTGCCCTTTTCTTTTGGACTCTGCCTCCTTTAGCCACAGTTTCTTCCTCTTCGTGTCCATGTGtcCTCTCGTTAGTCCCAGGCTCTGTAAGCCatgctcctcctcttcctccgaGGGGTTTTGAGCGGAGTTCCTTAGGTAACGCTGGTGCAGGCCAAGGCCAGGAAGTGCGTTCTGTCTGCGGCAACGAAACTCTTCCTCCAAGGGATCTTCGCCTGCAACGTCTGTGGGTGtgggcagagcagagcagagcagagatgGAATGAATCACAACTAAACCCTCTCTTCTCGCTGTCTAGATTGATGGCCTGAGGTGTTCAAGCCAACATTATTTTTTCCCCCTGTGTAGTGCTTTGAATTTCAGCCTTCTGATGAGATGTGTGGTGCAAAAAAAGTCACCTGAAAGGAAAACATATTACCTTGTGATGCCCTTGGCAGTGTGGATACAAtcagatagaaaaaaaaacacatctattACAGCAAGTTGAGCACAAGTGCAAAAAGGCATATTGATGTAACCAACATAAAACAACTAAGATGATATAAAACAAGAAGTTGAAAGAGTCCCTAAGGCGATACAGACACCTCCTTCCTTTCAAACGACAACCatatatttcattcatttttcatcTGCCTGACTTTATTGTGATTAGTCATGTAAATAAAATGAGATTTGGTTATTCTTTTCTCTAGGtaatttacatttatattgaATTAGTGGCAGGCAGGGTACGGGGTGGGGGGGACTTATTATGCTGTGAGATTACAGGCAGATCTCATCGCCATTGTGTTGTGTAATTAAAGCAgtggagaggagaagaaaggagGCCAGATGCTCGGCATGCTGAACCTGGTCCCATTTAGAGAAGGGATCTGCACCAGCATTTCAAAATCCCCTGCACGGTGCGTAACAGCCTGGCCTTAAACACATCAGAAGTCATTGGAGACACGACCACTTTGTTTGACATATTGCTGTACACCTGTGGGAGCACCTCAACATAAACATATAGTCATTTTAATCATTAATGTAGATTGTGAAACGAAATGGAAGATTGTGGCTATATGGCAACACTATCCTTGACgttttttctttgctttatGTGACATTTTAGAGGGAgatggctctctctctctctctctcaatgctTTCAGGAGGAGCTCAAGGGATTTTAGGCTGCATGTGCTCAGGTCTTAACAGATACAAAGGCATCACTGGATTTCAATTGTCTTTGAATAGGCATCGTATTACTGCAGGACCTCCATTTTGACCTGACTATTTCTTTGTCACAAATTTTAGGTCAAAATTGGTATTCTTGCCATATGTAGCTTATTTTCTTGCTGAAAACAGTTGATTTTTTAGTCGTTCCTGGCTTCTTTATTTTAGAGTTTGCAAATCAGCTTTATAAattgaacacacttttaaaaacacagagtTGACCCCTGCGAAGAGAGACCAGCACCCAGTGGAGCCAAAAGAAACAGGACAATTGGTGGCTTACTCTCAAAACTACTTGTTCTCTATCCAGCTCTGGAAAAACAACTAATCCCAAACTGCATTTGTCTGGTGATCCAATCAGGTGAAGTTAGACAGCTGGATTAAGCCAACATGTATGTGACTCCAAGCTTGTGCGATTTGTTCCGGAGGATCCATATTTGGAGCCATTTTGGGCTCGGTTACCTGGGTGATAAGATTCCTTCCACCGTCACATAATCCATAAAcagttaattaatttaaacaaagACAATATCAAATTGCAGTGATGATAATGAGATCTTTTAATGCTCATCAAGGCAGCCTTTTATTTTCTGGATCAAGGACTTAATTTGAAAAGCAGAGTGAACACAGTTCTGGATGCTTTCATTTGCAGCTATTGTTTTGAGAGTGCGTGTCATTTGTCTTCAGGCTAAACAATGCTGTGTCAATCTGTAAAAGCTGCGTGATACACACTGTCTAGACTGCAACACAGGAGCGTGTACACAGGCACAAACACCTGGGTTaacacctaaacacacacacacacacagccacaaaaTCTTTGTGTGACAGACAAAAGCAGCCTTGCTTGCAGTCGGCTGGAGCCTAAAGCTTAAAATAAATCACTGTCCAGGAGGGGGCTAACCCTACATGACAACCACAACTGTGCACCAGATTATATTCAACAGTCCACCTTCCCCCAGTTCAAGACACCTGGTGTCGTGCTGATGTGACTCTACTGCTGAGCACAGAGAGATACAGTCTGTGTCCTTGTTCAGACATGGCCAAAGAGAAACTGGCAGCTTATCTTTGCCATAGTTTATAAATTGGCCAGCGGCTCTGGGCCAATTCGATGCTTCATGCTAAGCTGTCAAGCAGATGAGGTGAAGGGGGGTTAACACCGGATGCTGCTTTCTGCCAACAGGAAGCCATCTTTCATAAAATGAGGAAACTTAGGAAGAGGAAATCACAGTATTGTGTGTCATATTGGAATGGATGGATGCAGGAGAAGAGGATGCAAAACTTCATTTCTAACAAGAAATACAGAGCCAATTTTATCAAATTATAACTAATAAAATGAATACTGAcaattaaatgtgaatattgagGATACAACTGAGGAATTTAAGTTTTCTCATTAGAAATCAATacataaaaaacatgtttgtagGAAATTATCATTTAGCCAGATGATGTCATGCTGTCTTTTGTATACAAACAGTGTCACCTAGTGGCCATGAGGGTCCACCTTCAAATTCAAAGGTCTCCATGTAGGGGCCACTACTCTCAGGTTAGGGACCACTACCCCCAGGTTAGGGACCACTGCTTTAGGAGACACAGTCTAAGTCGAGGAAAAGTAAAATCATTAGACCTTGGTTAATTCTGTTATGCCCCTAAAAAAAGTCAGGAGAAAATTATAGTGGGCTGTAGTTGATTGCCTGGGTATgaaataagaaagaaaaatgtgtttgtgatgtATTTTTGGACTTTGTCTCtattattttcttgtctttgacaAACTAGTCTATTGATTTTCTCATCAGACCTCTAAAAATTATCCAAATGAAAAAATCTGAGGTAAAATCCCTCTATTATTGGAGCTCTCAGTCTATAGACTTCTATCTAATCTTACACTGCTGGTGGATACCCTTATCGCCGATGTCCATAAGCGTCCGTAAATCCGTTTAGAAATAAATAAGACGCTCCTCATAACTCTGGAACATGCGCATCATCAAATTTTTTGATTTTCAGTATCAAAGTAATTCAGTTACAGTTATCTGTATACGCAGGGGTAGGCCTATATTGCAAACAGAAACTGCTAATAGCCAATTCTGCTAATTTGGTAAAATAGAAACAAATACAGGCCAAAATGCAACAACGGGACACAATTTGTAGCCCACAGCTGACTCCATGGCAACATTGTACGCCCTGTTTTCCAAATTATAGAAACTGTAGTTAAATAATTATAGCTAGGCCTAGATCACCATGCAAATAAAAGTAAGACAAAGATTATTGGAGTGTCAAAGTCAAAATTAACCAATGGTTTACACTTCTGGATCTAGTTCAAGCACATTATAAATATCTCCACTGATCCAGGAGAGGGAGCTATTGCACCATAAATATAATTCCTTCTCCTGAAACACATACATAAACTATGCTACTATGCCCACAACGCCGACCTGTTTGTGTAGACCATACACTTATCATACAATTTGTAATAAGATATTGTGGCGTATTGCTAGTTCGTGTAGTAATCCCTATCTACAACATATATCCCTAATTTATTCATCTCATctacacgcacacagagagagggaggaagagagagagagcatacaGGCTATGTAAGCAATAGAGATTGGCGCAGGGCTGCAGTGTCACCTAGCAACAGGACTGCGCAAGCGCCGCTTCAATCAGCACCGGTGAAAAATAAATTGAAGGAGCAAATATAAGCCGAATAGTAGAAGacattgtacacacacacacacacacacacaacgttaaAGTAAACATAAATACTCATAAACATTGAAGCATGAGTCAACTAAAAGGCATCGGCCTGCCCTCTTCTTTCCCCTCGGTTTCACTCCTGACTTCTCTCTTGCAAAAATATGCAGTGAGGCTTGTGTAAGTAAACTAGCCCGAGCACATTCctcaagaaaacacacaaactcttCTCTGTATACAGTGACCTCTGAGCCACTTGCAGTCATGAGCACCACTTAACTTTGAATCTGAGCCCATCATGCCTGGCGAACAGGACACCCGAGATAGTACATGAAATCAGACCTTCGTTTTTATTGTCTCCAAATGAGAAAAGTTTGAAATACCAATAGGACTTTCCAAGCTAAAAGATAGCTTATTGTTCATTTTGGAGTCCTTAGCTGGCGTCAATGTCTCTGCAGAGCTCAGGTTGTTTGAGAAGTTTTTAAAAGAGGTGCACTATCAGCACTTTTACAAgccaataaaaatgtattgatgGGAGGGGCGAAAAGAGAACTTAGGAAACAGGAGGAAGGGCACATGAATCCTGTTTCCTTCGCACCTGATCTGTAAAGGTAAAGCATACCTAccatgcagaaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298696 lncRNA downstream 5847 18188724 ~ 18201518 (-) True G220742
TU298640 lncRNA downstream 104209 18066795 ~ 18103156 (-) True G220695
TU298631 lncRNA downstream 157881 18049016 ~ 18049484 (-) True G220688
TU298627 lncRNA downstream 185476 18020560 ~ 18021889 (-) True G220685
TU298629 lncRNA downstream 192113 18010783 ~ 18015252 (-) True G220687
TU298790 lncRNA upstream 212392 18426781 ~ 18483776 (-) False si:ch73-174h16.4
TU298776 lncRNA upstream 257736 18472125 ~ 18578077 (-) False LOC120552692
XR_005638063.1 lncRNA upstream 257746 18472135 ~ 18497789 (-) True LOC120552692
TU298818 lncRNA upstream 395847 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA upstream 408302 18622691 ~ 18623385 (-) True G220839
XM_039790454.1 mRNA downstream 59265 18145295 ~ 18148100 (-) True mnx1
XM_039790302.1 mRNA downstream 74382 18098246 ~ 18132983 (-) True lmbr1
XM_039790055.1 mRNA downstream 174137 18024594 ~ 18033228 (-) True shha
XM_039790102.1 mRNA downstream 363077 17751382 ~ 17844288 (-) False LOC120552245
XM_039790534.1 mRNA upstream 17077 18231466 ~ 18357998 (-) True ptprn2
XM_039790909.1 mRNA upstream 145115 18359504 ~ 18374026 (-) False ncapg2
XM_039790908.1 mRNA upstream 145115 18359504 ~ 18374026 (-) False ncapg2
XM_039790907.1 mRNA upstream 145115 18359504 ~ 18374026 (-) False ncapg2
XM_039790906.1 mRNA upstream 145115 18359504 ~ 18374026 (-) True ncapg2
TU298248 other downstream 1332065 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1412241 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 1922630 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 1922633 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 2142144 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 395847 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 410337 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 724610 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 1101202 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2621908 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile