RNA id: TU298776


Basic Information

Item Value
RNA id TU298776
length 2040
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC120552692
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18472125 ~ 18578077 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttttttttttttttttCCAGAGTGCAGACAGAGATTCCGGCTACAAGCAGCAGCAGTCCGATGGCGATGCCAACATACACAGCGTCTACAAGAAGAAGATCCGGTCCCTAGCGTCCAATCAAAATTATCGGCCAAGGAGCTCCTCCAGCCACAGCGCCCGTTCTCAAAGGAGCAGGAAGTCCCACAATCCTTTTCATCAGTGCCATCACCACAGTCATCAGTGAAGTCACAGCTCTGCCCAGGAGTGAAACATCTGCCATTTTCACAAGGGAGCAAACCTGAAGGACAGGAGCctggaaaaaaagataaatataATGCACAGGACCAGAAGCAATGAGCCCCAACAAAGGCACATAGGAAGCCAGGAAGCCATGGCTCCCAACTGTGAAGCTAGGCTGCCTCACCACCTGATGTGGAGCATACTGGTGGATCAATTTAAGAGAAAATTGGTTAAAGCCAATAATGTGCAGTTCTTCACCTGTTACTACAGCATCTGACTGTACTTGCAGAATTGCAGTACATATCTTGTTATAACTTTGGAGCTCTGCATTGCCGTGTGTGATGTGAACTTCAGACCAGAGATCCAGTGGACCCACTGtcctgatatacagtatgtcggTATGGTATACTGCCCCCTGGTGCAAAGATCCAGatcaactttttaatgaatttatacctCTGGAATCAGAAGTCTGACGGATAAAGTGAAGCAAGTTGTCTAATAATGGCAACGAAAGGTGTCATGATGTGATCCATTGTTTGTTGTCGTTCTTGAACTCTTATATTTCCATTTCAGTGTCAAAAAGGAAGATTAAATTCAATTGATGATTTGCACCCATAAAAGGTGTTAATTCAATTATATGATTTAGCACTGAGGTCATAGTTGGTGGTGGTGTGGTGCTGGACTGCATTATATTCAGAGGTGTTTGTAATATTCTGCACATCTCATGTGTGTAAATAGAGAAGGGAAACTAAAGTAGAAACACCTCTGAATGTAATGTAGTCCACAGTACAACACCATCTTTAACTATGACCTCAATAATAAAGATATGATTCATCATCAAAGACTGAACATTATGAGCTTTGTAAAGGTAGATGGCAGGGCTGTTGAATTGGACTGCATTAGATTAaacaggtgtacctaataaagtgtCCACTGAGTGTAGGTGACTGTACGTACAGTAAATGTTCCTTACAGCTTTCTTCAGACATGACAGGACATTTACAGAACATGCAAAATGAtatggaagaggaagagagtttTTTACCGAAGCGTTCAGTAATGACCATCATGAGCACGATGGCTATCTTCCCATTTCTCCTCTAGTGAACCCAATACATTTTCTCATCCATTTCATAGTTCAATAAGTAAATATTTCTGCTGCCTAGTTTATTAAGTCCGACGGTGCTAAAGCAAAGAATGGCATAATGTTAAATTTGGACTTATGTTTCTGACTTGCTCAAATGCTGTATGTAAAATTTTGCAGGATATTCTTTAATTTTTCCATGCAGAtggcatacacacatacatagtagTCGCTGAATGTCCTAAACCTATGTTGACAGCACATAATGTTAAAATAGTTGGCAGATATTCTACAATGTCTTGTTAAAGCCAAGATAAAATTCCCAGCCATGAAAGAACACACGATGGGGGTGCATGCAGTGTGTCTCACTACTCCATCACATAATGTGATATAAAATGAAGCGGTGGAGGAAAATGCCCCTGAGGCGCTTCAGTATATAATTACAGTTCCTGCTGTCTTTGGTCTCATCAGTATTACTGTTCGTTCagtgcagcctgcagcagcgaAGGGGGCAGTGAGAGCAGACACTCTTCTCCTTCCTGGCTCTCTTCATGGTGGGATGAactgtcagggcagcagtgtTACTCCCTGTCTTAACCTTCAAGAAATCCCTCTACGGTCACACAAACTCACATCCCTTTCTATTTCCATCCCACTTTATTTGCTctatttttacttgtattgAAAATGACCCTGTCatgttttgaaaataaaaaacacttctTCTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298686 lncRNA downstream 257736 18207365 ~ 18214389 (-) True G220732
TU298696 lncRNA downstream 270607 18188724 ~ 18201518 (-) True G220742
TU298640 lncRNA downstream 368969 18066795 ~ 18103156 (-) True G220695
TU298631 lncRNA downstream 422641 18049016 ~ 18049484 (-) True G220688
TU298627 lncRNA downstream 450236 18020560 ~ 18021889 (-) True G220685
TU298818 lncRNA upstream 32159 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA upstream 44614 18622691 ~ 18623385 (-) True G220839
TU298879 lncRNA upstream 162340 18740417 ~ 18740616 (-) True G220860
TU298903 lncRNA upstream 194904 18772981 ~ 18773497 (-) False LOC120552352
TU298915 lncRNA upstream 237829 18815906 ~ 18816378 (-) True G220888
XM_039790675.1 mRNA downstream 41657 18426762 ~ 18430468 (-) True si:ch73-174h16.4
XM_039790368.1 mRNA downstream 64200 18374720 ~ 18407925 (-) True esyt2b
XM_039790371.1 mRNA downstream 64201 18374720 ~ 18407924 (-) False esyt2b
XM_039790370.1 mRNA downstream 64201 18374720 ~ 18407924 (-) False esyt2b
XM_039790369.1 mRNA downstream 64201 18374720 ~ 18407924 (-) False esyt2b
XM_039789642.1 mRNA upstream 35073 18613150 ~ 18617399 (-) False LOC120552023
XM_039789641.1 mRNA upstream 35073 18613150 ~ 18617399 (-) True LOC120552023
XM_039789645.1 mRNA upstream 39588 18617665 ~ 18620964 (-) True chmp4c
XM_039789648.1 mRNA upstream 62180 18640257 ~ 18648623 (-) True arl8
XM_039789649.1 mRNA upstream 67367 18645444 ~ 18648625 (-) False arl8
TU298248 other downstream 1596825 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1677001 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2187390 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 2187393 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 2406904 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 32159 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 46649 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 360922 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 737514 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2258220 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile