RNA id: TU298790



Basic Information


Item Value
RNA id TU298790
length 751
lncRNA type sense_over
GC content 0.32
exon number 2
gene id si:ch73-174h16.4
representative False

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18426762 ~ 18483776 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


agtttttttttttttttttttttttattgttgggAGATAAGGTTTCCTCCTCCTGAAGGAACATGCagtttttaatatttgtttgcCAGACAAAAGGACACATGGAGGTGATTACATACAATAACCTCTAGTCCTTCGGGAGGACAGTGGTAAGCCATGCTACAATATAATGGTGCTATACTACTTTGATAAGTTCACTTGTTGAATGTATAAATGAAATTGTTGCATATGCTGGTTTTGTACCAAAAATTACTTTGGGCTTTATAATCAGATTAACAGGATAGTTGGAATACAACTATTATCATCCTTCTGTTTGAAGCAgtactttttttataaaaggcACTCATTCATATTCCGTATCTGATTACTTATTACATGTGCACACTACACGTCAACAACCAAAACTACAAGTTCGACAGTGGTTTCcttttacagtatgtgttgGCTAAGTATTTGCATAATTGTTCCTTAAACAGGAAATGAATGTAActacaaaatatattttaaatacataccAATTATTTGAGTATTGTACTTTGTCTTTGTGCTTTTCTAATTGACATATTTGCCATACTGTATTTCTTGAATAtctgttttaaaatgtcatgGATTGTGCTTTAATATATCTGTCCAACTTACTGTATATGTCAAGTCAAAGGTCAAAAATCACCTTTACAGGAAATGCGTGTACCAAATCACCCTCGTACCACATGAATGCATTTACATACTGTCAGTCACAAAATAAATCAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU298686 lncRNA downstream 212392 18207365 ~ 18214389 (-) True G220732
TU298696 lncRNA downstream 225263 18188724 ~ 18201518 (-) True G220742
TU298640 lncRNA downstream 323625 18066795 ~ 18103156 (-) True G220695
TU298631 lncRNA downstream 377297 18049016 ~ 18049484 (-) True G220688
TU298627 lncRNA downstream 404892 18020560 ~ 18021889 (-) True G220685
TU298818 lncRNA upstream 126460 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA upstream 138915 18622691 ~ 18623385 (-) True G220839
TU298879 lncRNA upstream 256641 18740417 ~ 18740616 (-) True G220860
TU298903 lncRNA upstream 289205 18772981 ~ 18773497 (-) False LOC120552352
TU298915 lncRNA upstream 332130 18815906 ~ 18816378 (-) True G220888
XM_039790368.1 mRNA downstream 18856 18374720 ~ 18407925 (-) True esyt2b
XM_039790371.1 mRNA downstream 18857 18374720 ~ 18407924 (-) False esyt2b
XM_039790370.1 mRNA downstream 18857 18374720 ~ 18407924 (-) False esyt2b
XM_039790369.1 mRNA downstream 18857 18374720 ~ 18407924 (-) False esyt2b
XM_039790909.1 mRNA downstream 52755 18359504 ~ 18374026 (-) False ncapg2
XM_039789642.1 mRNA upstream 129374 18613150 ~ 18617399 (-) False LOC120552023
XM_039789641.1 mRNA upstream 129374 18613150 ~ 18617399 (-) True LOC120552023
XM_039789645.1 mRNA upstream 133889 18617665 ~ 18620964 (-) True chmp4c
XM_039789648.1 mRNA upstream 156481 18640257 ~ 18648623 (-) True arl8
XM_039789649.1 mRNA upstream 161668 18645444 ~ 18648625 (-) False arl8
TU298248 other downstream 1551481 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1631657 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2142046 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 2142049 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 2361560 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 126460 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 140950 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 455223 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 831815 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2352521 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile