RNA id: XM_039790675.1


Basic Information

Item Value
RNA id XM_039790675.1
length 3025
RNA type mRNA
GC content 0.47
exon number 3
gene id si:ch73-174h16.4
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18426762 ~ 18483776 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTAAAATGTAAACACTCCTCGCGCTCCAGCAGCAGCTTCCTCAGTGATAGTTTGTCGGGTTAGCTAACGTGATGTTTCCGCGTTTAATATTTTACCAGCGAAAGGTCACCAGCTTAGTTTATTACTGTTAATAATCCAAGTAGATCAGATGATGTTCTAAattcttttttggggctttacaAGACCGCATCAAATTACTGTCGTAAAGTTAATATTAGCTAGtttcagctagctagctctcagaCGTGTAGCCTGCTTCCTTGCAAAGGAATTGCACTCAGCATTATTTCGGCTGCTATATTTTTATGCTAAAAGCTCACCCTTCTTTGTGCTGATATGGTGCTTTCGTTGGTAAGCCTTTGTGCCAAGGAGGTGGTGAGTGACCACAGTTCGTCGCCCTGCTGGCTAAGGTGGGTGCCCAGGGAGCTGTACAGACCGCTGCTGGAGGCCTCTTTCGCCAGCTGCAGACCGCTGGCTGTTGGTGAACTGGTGCAGAGGTGGCCTGAACGCACACTGCGGGTCGGCAGACGCAGGAAACAAGGGCAAACTGGGCCAAATCGACTCTGCATCCAAGCTCTGTTACTTGCAGTTGTCAGAGGACTGTCGGACAAAAGGTGTGCCCTGCATGTACTGGACCTCTGTGGACTGCAAGGAGATGAAGGAGGGATGGGAGACCCCATGGGAGGATGGTCTCTGACTGTAGCTCTCTGCACCATGGTTGTTCAGGCCAGAGCTGGGGCACAGCGGGAGAGGAAAAGGTTCTCAGCTCTGGAGAGAGAAACGGATgtgaaaagagagaggggacagcggaagagagggaaggaaaaaAATGGCGACGATGAGGCAAGCACAGATAATAAGGAGCTGGGGGGAAATGACAGAGAGAGGATGGGATCATGTGGGACTCTGGGCGAAGAGGAGCTGATTAAAGGTGTCAGGAGGAGGATGGAgatagagaggaaaagagagattGCCATGACAGGTTTAGGTGGTAGTAGTATAAATGAGACTGAAGAAAAAGATGTAAACAGTGATGTGTTGGTGCATGTAAGAGCTGATCTTTTTGTAAATGCTCGCTCTTGGGAGCGTGTTCGCGGGGCTCTGAGTTCAATGGGACCCCTCAAGCTTCAGTGCAGATACCTACGTGTGGAAGAGATTTCAGTATCTAGTATCAGGACTCTGCTAGGCATGCTGCCTCGCCAGAGTCTTCTGGGCATTGATGTTCGCTACAGCAGCCTCGGGGTGGCTGGCTTGGCTGAGCTGCTGCCTCTTCTCTCCACCTTCCCAGCACTGAACTGTCTTCGCTTGCACTACTGTAACTTGGATTTTCGCGGAGACCAGCCTGGCCAGGAAGAGGCCCTGAGGGACTTGTCACAGGGTCTGACACAGCTGCAAGAACTGCGACGCCTCAGCCTCACTGCGCTGCGCCTGCCTGGACAACTCCGTGTGCTGCTTAGCTCACTGCCTCAGCCTCTAGAGATACTGGAGCTACCATATTTGAGCCTGAGCCCTGCTGACCTCGCCTATCTGTCCTGCAGCCATCATGCCTCCACACTGCAGCAGCTGGATCTAAGCGAGAACCATCTAGATGAGAACACCCTGACCTCTATTCGCCGCCTCCTCTCCCAGGCTTCCAGTAGCCTGCAGCACCTCTCTTTAAGTGGCTGCGGCATTACTGATGGCCTGCTGGGACTCTTGCTGCCCACACTGGGAGGCTGCAGGGCCCTCAAGAGCTTGGCTTTGGCCCTGAACCCACTCTCCATCGCAGGCCTCGTTGACCTGGTTAGGATGGCTGTGAGAATGCCCTCTCTCCGTCAGTTACTGTACCCCAACCCCCTGGAGGACTACCAGCCGGGCCTTCCTGACCTGCCCACCAGTGCTCAGCTCTTAGACTGGCCGCTGGATGAAGTCACAGACATCAACATTACCAGCAGCCAGCTCAACAGGGTGCTGATAGAGAGCGGGCGCACAGACCTCTTTCTGACATGCGACCTGCTCAATTATGACAAAGACTTGGTGGACTAGAGCAGAGGTGAAGGGGAAGGGAAGATGCTTTTTTTAGTTAGCTTGCCAACACATGTCAGAGCAATGTAGATATACCTGACAATGAAATTGTCACCCTAATAATTATCTAGTATTCAATTGTCTGTTTTTTATCTTTACTTAATCACAATCTGTCTCATGTATATTTCTCTTAAGGGTAGACAGAGTTAAGGGTGATGGGGGAGTTTGGGGGGGAATTCATTGTGTCACCGaagcaacagtttttttttttttttattgttgggAGATAAGGTTTCCTCCTCCTGAAGGAACATGCagtttttaatatttgtttgcCAGACAAAAGGACACATGGAGGTGATTACATACAATAACCTCTAGTCCTTCGGGAGGACAGTGGTAAGCCATGCTACAATATAATGGTGCTATACTACTTTGATAAGTTCACTTGTTGAATGTATAAATGAAATTGTTGCATATGCTGGTTTTGTACCAAAAATTACTTTGGGCTTTATAATCAGATTAACAGGATAGTTGGAATACAACTATTATCATCCTTCTGTTTGAAGCAgtactttttttataaaaggcACTCATTCATATTCCGTATCTGATTACTTATTACATGTGCACACTACACGTCAACAACCAAAACTACAAGTTCGACAGTGGTTTCcttttacagtatgtgttgGCTAAGTATTTGCATAATTGTTCCTTAAACAGGAAATGAATGTAActacaaaatatattttaaatacataccAATTATTTGAGTATTGTACTTTGTCTTTGTGCTTTTCTAATTGACATATTTGCCATACTGTATTTCTTGAATAtctgttttaaaatgtcatgGATTGTGCTTTAATATATCTGTCCAACTTACTGTATATGTCAAGTCAAAGGTCAAAAATCACCTTTACAGGAAATGCGTGTACCAAATCACCCTCGTACCACATGAATGCATTTACATACTGTCAGTCACAAAATAAATCAGTCAAAAAGCTTTGAAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298686 lncRNA downstream 212373 18207365 ~ 18214389 (-) True G220732
TU298696 lncRNA downstream 225244 18188724 ~ 18201518 (-) True G220742
TU298640 lncRNA downstream 323606 18066795 ~ 18103156 (-) True G220695
TU298631 lncRNA downstream 377278 18049016 ~ 18049484 (-) True G220688
TU298627 lncRNA downstream 404873 18020560 ~ 18021889 (-) True G220685
TU298776 lncRNA upstream 41657 18472125 ~ 18578077 (-) False LOC120552692
XR_005638063.1 lncRNA upstream 41667 18472135 ~ 18497789 (-) True LOC120552692
TU298818 lncRNA upstream 179768 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA upstream 192223 18622691 ~ 18623385 (-) True G220839
TU298879 lncRNA upstream 309949 18740417 ~ 18740616 (-) True G220860
XM_039790368.1 mRNA downstream 18837 18374720 ~ 18407925 (-) True esyt2b
XM_039790371.1 mRNA downstream 18838 18374720 ~ 18407924 (-) False esyt2b
XM_039790370.1 mRNA downstream 18838 18374720 ~ 18407924 (-) False esyt2b
XM_039790369.1 mRNA downstream 18838 18374720 ~ 18407924 (-) False esyt2b
XM_039790909.1 mRNA downstream 52736 18359504 ~ 18374026 (-) False ncapg2
XM_039789642.1 mRNA upstream 182682 18613150 ~ 18617399 (-) False LOC120552023
XM_039789641.1 mRNA upstream 182682 18613150 ~ 18617399 (-) True LOC120552023
XM_039789645.1 mRNA upstream 187197 18617665 ~ 18620964 (-) True chmp4c
XM_039789648.1 mRNA upstream 209789 18640257 ~ 18648623 (-) True arl8
XM_039789649.1 mRNA upstream 214976 18645444 ~ 18648625 (-) False arl8
TU298248 other downstream 1551462 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1631638 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2142027 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 2142030 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 2361541 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 179768 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 194258 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 508531 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 885123 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2405829 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile