RNA id: TU298817


Basic Information

Item Value
RNA id TU298817
length 1205
RNA type TUCP
GC content 0.37
exon number 2
gene id G220833
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18610236 ~ 18697970 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaCAGTCACATATAACCAGTCAGAAAAAATTGTCATTTAAGTCATAGTATGTGAAATGTTACCTTCCCTCCCCATCTGTGATTTTAGGGATTATTTACTGCTTTCTAAGAGAAGGGCCAAGCGTGATTTCAAACACCACTTTATTCACATCTGCAATATATCGGCCAATCAAACAAAGCACAGAGCAGTCAAGAAAAGACAACTCCTAACCACTTGTAAGGAACATAAAAGGAGCTTCTCAATttctaaaaaaataatgtacaacATAATCAGCCATTTAACTGTAATGTTTGTTCCTCTAAATTGTACTATACATTCACTTTTCATTGAAGCCTTTGCACTGAGCAAAGAAAAACACTGGCAAGACAAACTTAGAAATAGGAGTTACCCAGGAAcagatttttcaaaaaaaaaaaatactggatTCAGACAACGTAAAAAATTCATCATGGAACTGGAGAATAGTGAATTAAAACAAAAGAATGGAACATTTGTTAAAAGCTGATATGTTTTCTAAGCTGCAACCCAGGTGCCAATAGTTTTATTGGCCGTGCCCTACTGTCTAAAGTACAGACGAGCGTTCGCAGTAATAAGATTCAATAATACAAGTTTCAGTTATTAATGCAGTGTTATTACATTTCAAACTCAGTGCTGAAAAAGTCCTCACAGTTACATCActgttaaaaacacaaaaagcaaCACACAAAAGTAGCAAAGGATGAAACAACAGATGAGTTCTCAGCTGATCAGTCATAACTGGGTTTTCATGGACGTAGCCGTGCCCATTCTCAGGTAGGAATATCATCAAGTCTTAATCTGTCAGTTTTCATTGATGCTGGTGTGTTCTGTACTCCTTTTTTTGACATCATTTGCAAGACACTCCGCTCACTTGCAGTCTTTGATTGCCACTCATTTATTACAAGACCTTCTTCTCAAACGTCCGTGATCAGTCTATATGGAAATGTGGCTGGTGTAGAGAAGCCCATATATGTGTGTGCCATTTGGGGTTGGAGATGTCAAAATCCATACTGGAGAAAGAACGAGTTTTAAAGTCACTGCAGGGTCTTTAAAAGATGTCCACCAGCTCACATTACACAGTTCACTGCCAGCAGAAGAGAAGGCTTCAAACATGCATTAGTCTAAAGCATGAAAATGGCTTTGGATGAGGCAGcaaaatcccccccaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298776 lncRNA downstream 32159 18472125 ~ 18578077 (-) False LOC120552692
XR_005638063.1 lncRNA downstream 112447 18472135 ~ 18497789 (-) True LOC120552692
TU298790 lncRNA downstream 126460 18426781 ~ 18483776 (-) False si:ch73-174h16.4
TU298686 lncRNA downstream 395847 18207365 ~ 18214389 (-) True G220732
TU298696 lncRNA downstream 408718 18188724 ~ 18201518 (-) True G220742
TU298879 lncRNA upstream 108942 18740417 ~ 18740616 (-) True G220860
TU298903 lncRNA upstream 141506 18772981 ~ 18773497 (-) False LOC120552352
TU298915 lncRNA upstream 184431 18815906 ~ 18816378 (-) True G220888
TU298921 lncRNA upstream 198276 18829751 ~ 18829985 (-) True G220893
TU299030 lncRNA upstream 408790 19040265 ~ 19043216 (-) True G220972
XM_039790675.1 mRNA downstream 179768 18426762 ~ 18430468 (-) True si:ch73-174h16.4
XM_039790368.1 mRNA downstream 202311 18374720 ~ 18407925 (-) True esyt2b
XM_039790371.1 mRNA downstream 202312 18374720 ~ 18407924 (-) False esyt2b
XM_039790370.1 mRNA downstream 202312 18374720 ~ 18407924 (-) False esyt2b
XM_039790369.1 mRNA downstream 202312 18374720 ~ 18407924 (-) False esyt2b
XM_039789648.1 mRNA upstream 8782 18640257 ~ 18648623 (-) True arl8
XM_039789649.1 mRNA upstream 13969 18645444 ~ 18648625 (-) False arl8
XM_039789506.1 mRNA upstream 27802 18659277 ~ 18728589 (-) False cacnb2a
XM_039789507.1 mRNA upstream 27802 18659277 ~ 18717622 (-) False cacnb2a
XM_039789509.1 mRNA upstream 27802 18659277 ~ 18708780 (-) False cacnb2a
TU298248 other downstream 1734936 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1815112 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2325501 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 2325504 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 2545015 16064670 ~ 16065221 (-) True G220124
TU298948 other upstream 307524 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 684116 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2204822 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 3358542 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3571308 22202783 ~ 22218366 (-) False smpx

Expression Profile