RNA id: TU298903


Basic Information

Item Value
RNA id TU298903
length 517
lncRNA type sense_over
GC content 0.31
exon number 1
gene id LOC120552352
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18772977 ~ 18810944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAATGTATATTTCATTATCCAAGTTTTGTAGGAAATTATAAATTCTATGAAGCCAAGTGGACTTACTGTTGTGCTTTTCATGACATGTAATTGCCTTAAAATGAAAAGGTGCAAAATGATGcgcaaaaaaacatgaaatgtcgCTGATATGCTATCTTTGGGGAACCTGTTATCTAACCTCATGAATGTCtatatagcattttcatttATACGAGTAGAAACCAAAGGAAATATTTAcacataaatacagaaaaatgtcACAATCAGCTTGAGTTTTAGTTCAAGACTGAACGTTTACAGTTTAATACTCAATGTATGATACAGTATTTTGTGATTATGAGATTTATTTTTCACTATTACAGACGTACATATGTTTATGAATATGAATCTGTGGATGCTACCTACAAATATAAAATGTGCCATTTTCTGCACTCAGGTACTGTTTCCTGTTAAGAAAAACACTTAAACAACACTACAAAAGATGAAGGAAACACTCacaaataaatatgtaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298879 lncRNA downstream 32365 18740417 ~ 18740616 (-) True G220860
TU298818 lncRNA downstream 75011 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA downstream 149596 18622691 ~ 18623385 (-) True G220839
TU298776 lncRNA downstream 194904 18472125 ~ 18578077 (-) False LOC120552692
XR_005638063.1 lncRNA downstream 275192 18472135 ~ 18497789 (-) True LOC120552692
TU298915 lncRNA upstream 42409 18815906 ~ 18816378 (-) True G220888
TU298921 lncRNA upstream 56254 18829751 ~ 18829985 (-) True G220893
TU299030 lncRNA upstream 266768 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA upstream 266768 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA upstream 266768 19040265 ~ 19043216 (-) False G220972
XM_039789520.1 mRNA downstream 10135 18756353 ~ 18762846 (-) True LOC120551921
XM_039789521.1 mRNA downstream 10333 18756353 ~ 18762648 (-) False LOC120551921
XM_039789519.1 mRNA downstream 18381 18741999 ~ 18754600 (-) True mrc1a
XM_039789516.1 mRNA downstream 32895 18731524 ~ 18740086 (-) True LOC120551919
XM_039789517.1 mRNA downstream 37402 18731524 ~ 18735579 (-) False LOC120551919
XM_039789988.1 mRNA upstream 48485 18821982 ~ 18826882 (-) True enosf1
XM_039789989.1 mRNA upstream 58090 18831587 ~ 18853616 (-) True LOC120552191
XM_039789990.1 mRNA upstream 58090 18831587 ~ 18847246 (-) False LOC120552191
XM_039790256.1 mRNA upstream 165416 18938913 ~ 18949495 (-) True mettl4
XM_039790253.1 mRNA upstream 215684 18989181 ~ 19005165 (-) True LOC120552316
TU298817 other downstream 141506 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 148183 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 1897681 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1977857 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2488246 16266303 ~ 16284735 (-) False drd3
TU298948 other upstream 165502 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 542094 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2062800 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 3216520 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3429286 22202783 ~ 22218366 (-) False smpx

Expression Profile