RNA id: XM_039790345.1


Basic Information

Item Value
RNA id XM_039790345.1
length 3763
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC120552352
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18772977 ~ 18810944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATTAAACAAACAACTGTGTTTAACAGTGCGCTTTAGAGGTAACGTTAATGGTAAGTGACTTTTGTTACCTTTCTTTGAGAACATGGCTAGACTAGTTTCCCTCACGTTTCCAGTCTAAAGCTAACTAACGGTTGGCCATAGcaacatttcccaaaatgtcaaattatttcTTTAATTGAGATCTTGTGTTTGGAGGCATCAACATATAAGCTAAATATTAAGAGTGAAGAGTATTTTTATAGAACagtcattattattttatactgtaggCCTATCTTTGCTCTCTCTACGCAACAACAAAAACGATTTAATTGTGAAAGCGACACCGGAAGTGCAGCCCGTCTTTCTGTTTACCACTGGTAGTAACCTGGTAGTAACAGACATCACTTCTTCCTCCTTCAGGCTCCGGGAACATCACATCACTCCTGCAAAAACTCCTCTGAAACTAAGCTAGCAAGAGACAATGGGATTTTAAACTGAAGACTCAACATGAAGACATACTCATAGttgtattatttcttttattagtgtgtgtCGTTCTTCGTGAAACAAGTTTACACCTTTGCACTGGATGCTGAGATGCGCAGAAAGTGACAGCGGTCCTCATCTCTTCTACAGTCCTCAACGAGTTACAAAACGCCATGAAAGACGACTTTGCAGACGAGGAGGAAGTGCAGTCTTTTGGATACAAGAGGTTCGGGATCCAGGAGGGCACCCAGTGCACTAAGTGTAAAAATGAATGGGCGCTGAAGACCTCCATAGCTCTGCTCTATGTGCTGTGTACTCTCCTCACCATCGCTGTTGCTGTGCTTGGATATAAAGTGGTGCAAAGAGTTGACAGTGTGTCTGAAGGTATTGCAAACTATGGAGGAAAGATAAAAGCTGTTGAGACTGATTTGAAAAAGCTCGATGATCAAGCAGGGGAGAAGTCAGAGAATACCACCACAGAGATCCAGGCATTTAAGAACAACATCTGGACACTCCAGAGGCAGCTGTCTGCGGTGGAGGAACACATCCACAGCGATCAAGTTAAGCTGGGTCAGCTGCAGAGCATTGGCTCAGACATTCAGAAAAGTCAGGGCTCCATTCAGGGACTGCTGGACAGCAACACAGCCACCTTGCACTCTGTAAATGGCACCCTGCAGTCTTATGGTGGCACCATTGGGGGTCTGCAGGACGACACGGCCCGGCTGCAGAGAGAACTCCAGCAGCAGGTGAAACTTCAGGACCAGGCGCTGCTCAGCATCAGCAGCCTCAACTTCACACAGGCCCAGCAGAGAGGCCTCATTGCCGTTCTGCAGCGCTCAGTGGATGACACCAGCCAGGCCATCCAGAAAATGCGCAATGACTTTCAGAGCCTCGAGCAGAAGGCCCGGCAGGCGCACTCTGATACCGAGTGGCTTCGTAATAAGGTGGAAAACCTGCAGGTCATGGCCGGTAACACCTCGGCTCTTGCAAAAGCCAACAACGACAGCCTGGAGGAGGTGGGATCACAGCTGGCTTTCATGGCCAACCAGCTCCAGAACACCAGCAGCCTGGCTGATGCTCACGACCAGACCCTGAGGGAGATCATGGACCGGCAGAGGGACTTCGGTAACCTCACGTCCACCAAGTTTGACCGGCTGGAGGTGCGCCTGGATGAGTCGGAGCAGAGCATGGACCGCGTGACCGGCAACATCAGCTTCACCACGCAGCTCCTGGGCGCCATCAACCTCAACCTGAACGACTTGCGCATGTGCTCCGAGACCGTCGGCCGTCACTCGGACTTCTTGCTGAACCTCAACAGCAGCGTGACAGACGTGAGGACAGACGCAGACGGTCTGAGGTCCCAGCAGGAAGAGCTGGCAGCACGGGTGGACAAGGAGGTCACCAGCCTCTCTATTGTCATGGAGGAGATGAAGCTGGTGGACAACAAGCACTCCCAACTAATAACCAATTTCACTATTTTACAGGGTCCCCCTGGTCCCAGAGGACCAAGGGGGGACAAAGGACCTCAGGGACCATCTGGTCAGCCTGGCCagaagggagagaaaggggaaaaTGGTGGTCCAGGGATACGAGGACCCAGAGGAGAGCAGGGTTTCCCCGGACCATCAGGTCTGCCAGGGTTAAAAGGCCTGCCAGGCGTATCTGGCAGCCCTGGATCCAAGGGCTCCCGAGGGTCAGGAGGAAGGGCCGGACCTCCTGGAGCTAAGGGAGAGCCAGGTACTGCCGGTCTGCCTGGAAGAGACGGACAGCCTGGTCCTCAGGGGGCACAGGGCCCACCGGGTATCAGAGGCGCAATGGGACCAGCTGGTGAGCAAGGGCCAAGGGGACTGCTGGGACCAGTGGGGCCCCCGGGGCCACCAGGACCACCGGGACAACCAGGGATTCCAATCCGGGCTCCGTTAATTCCTTTGGGCCCTGTGTCTCTGCAGGATGAGGCAGTAGCTCCTACACTCTGGGACCCAGGATGCCCTTTTGAGTGGGTGAACTACAGAGACAAGTGCTACTTTTTCTCTAAGGACCTTCACAGTTTTGATGACGCAAAGGCAACCTGCGAATCAACGTCCGCTTCATTATTGATCATCAACGATATGGAGGAACAGAAATGGCTGAAGAAGCAGACCTTTGGAAAGGGCTACTTCTGGATGGGTCTGACCGACAGGGAGGAGGAAAACGTTTGGCGCTGGCTGGATGGGACTGAACCTGCTTTCGCGAAGTGGAAGCCTGGTCAGCCTGACGACTGGGGCCATGGACATGAAATGGGAGAAGACTGTGCGGGGCTCATCCATGAAGGGTTGTGGAATGATTTCTTCTGTGAAGATCTCATAAGCTACATCTGTGAGAAGGAAATGGAGACCTCAAGATTGCCTGGATCGTAGCGATGTCTTGAAAGGGAGCTTGCAGTGAGCAGCTAGACACGTGGCACTGGTCCACCGACACGGTGCGTGGAGAGTCCATACGGAGAGAGCAAAGGGACAATTTTGAAACGAGCCCAGGGCTGCAACAGCGAACGTCTCTCCAATGCTGAAGAGACGCCTTTCTCCTCCAAAGTAAACCCAGTCCAACATCACCAGCAAGTGCAATACAGCAGGGCAATCACAGAaggaggactttttttttttttaaagtaccaAATCACCAATCGAttgatatatagatatatagatatatatatatctatatatatatatatctttttttatggttatttgaaatacattttataaatcTGTATTCCACGTGCAACTGAATATCTGAATGTATATTTCATTATCCAAGTTTTGTAGGAAATTATAAATTCTATGAAGCCAAGTGGACTTACTGTTGTGCTTTTCATGACATGTAATTGCCTTAAAATGAAAAGGTGCAAAATGATGcgcaaaaaaacatgaaatgtcgCTGATATGCTATCTTTGGGGAACCTGTTATCTAACCTCATGAATGTCtatatagcattttcatttATACGAGTAGAAACCAAAGGAAATATTTAcacataaatacagaaaaatgtcACAATCAGCTTGAGTTTTAGTTCAAGACTGAACGTTTACAGTTTAATACTCAATGTATGATACAGTATTTTGTGATTATGAGATTTATTTTTCACTATTACAGACGTACATATGTTTATGAATATGAATCTGTGGATGCTACCTACAAATATAAAATGTGCCATTTTCTGCACTCAGGTACTGTTTCCTGTTAAGAAAAACACTTAAACAACACTACAAAAGATGAAGGAAACACTCacaaataaatatgtaaaaactaaa

Function

GO: NA

KEGG:

id description
K10062 COLEC12; collectin sub-family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298879 lncRNA downstream 32361 18740417 ~ 18740616 (-) True G220860
TU298818 lncRNA downstream 75007 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA downstream 149592 18622691 ~ 18623385 (-) True G220839
TU298776 lncRNA downstream 194900 18472125 ~ 18578077 (-) False LOC120552692
TU298915 lncRNA upstream 4962 18815906 ~ 18816378 (-) True G220888
TU298921 lncRNA upstream 18807 18829751 ~ 18829985 (-) True G220893
TU299030 lncRNA upstream 229321 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA upstream 229321 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA upstream 229321 19040265 ~ 19043216 (-) False G220972
XM_039789520.1 mRNA downstream 10131 18756353 ~ 18762846 (-) True LOC120551921
XM_039789521.1 mRNA downstream 10329 18756353 ~ 18762648 (-) False LOC120551921
XM_039789519.1 mRNA downstream 18377 18741999 ~ 18754600 (-) True mrc1a
XM_039789516.1 mRNA downstream 32891 18731524 ~ 18740086 (-) True LOC120551919
XM_039789517.1 mRNA downstream 37398 18731524 ~ 18735579 (-) False LOC120551919
XM_039789988.1 mRNA upstream 11038 18821982 ~ 18826882 (-) True enosf1
XM_039789989.1 mRNA upstream 20643 18831587 ~ 18853616 (-) True LOC120552191
XM_039789990.1 mRNA upstream 20643 18831587 ~ 18847246 (-) False LOC120552191
XM_039790256.1 mRNA upstream 127969 18938913 ~ 18949495 (-) True mettl4
XM_039790253.1 mRNA upstream 178237 18989181 ~ 19005165 (-) True LOC120552316
TU298817 other downstream 141502 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 148179 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 1897677 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1977853 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2488242 16266303 ~ 16284735 (-) False drd3
TU298948 other upstream 128055 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 504647 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2025353 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 3179073 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3391839 22202783 ~ 22218366 (-) False smpx

Expression Profile