RNA id: TU298915



Basic Information


Item Value
RNA id TU298915
length 387
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G220888
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18815906 ~ 18816378 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCCTCGCACAAACTTTGGAGTTGCCAGCACTCTGATGCTTGTCTGCGGAGTGGTCTGCACAGATATCTGCTCTGGGACAGTCCCAAAGCAGAAAGGGATCCTAAATCTGTGCTTGATTGCTGAAAGTACTCCTCTGCTTCTTGTATCTCTTCAAACACATCAGCCATCGTGGAGCTGAATTCTTCCAGCACGTTCCTCCCAAAGTCAGACACTGAATCGAGGATGTGATCCAGACTGAAGAAGCCAGCGCTCATGTCGCCCTGCATGGCCGACAGCGGGCTAGGTCGGGCCTCTGTGGTGAAGGCAGCCAGGAAGGAATGCCCCAACACCTGTTGCATCCTTTTCACCAGTATGATGCTCTGGTTGTACAGGAGGCTGATGTTTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU298903 lncRNA downstream 42409 18772981 ~ 18773497 (-) False LOC120552352
TU298879 lncRNA downstream 75290 18740417 ~ 18740616 (-) True G220860
TU298818 lncRNA downstream 117936 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA downstream 192521 18622691 ~ 18623385 (-) True G220839
TU298776 lncRNA downstream 237829 18472125 ~ 18578077 (-) False LOC120552692
TU298921 lncRNA upstream 13373 18829751 ~ 18829985 (-) True G220893
TU299030 lncRNA upstream 223887 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA upstream 223887 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA upstream 223887 19040265 ~ 19043216 (-) False G220972
XR_005637963.1 lncRNA upstream 500276 19316654 ~ 19317227 (-) True LOC120552156
XM_039790345.1 mRNA downstream 4962 18772977 ~ 18810944 (-) True LOC120552352
XM_039789520.1 mRNA downstream 53060 18756353 ~ 18762846 (-) True LOC120551921
XM_039789521.1 mRNA downstream 53258 18756353 ~ 18762648 (-) False LOC120551921
XM_039789519.1 mRNA downstream 61306 18741999 ~ 18754600 (-) True mrc1a
XM_039789516.1 mRNA downstream 75820 18731524 ~ 18740086 (-) True LOC120551919
XM_039789988.1 mRNA upstream 5604 18821982 ~ 18826882 (-) True enosf1
XM_039789989.1 mRNA upstream 15209 18831587 ~ 18853616 (-) True LOC120552191
XM_039789990.1 mRNA upstream 15209 18831587 ~ 18847246 (-) False LOC120552191
XM_039790256.1 mRNA upstream 122535 18938913 ~ 18949495 (-) True mettl4
XM_039790253.1 mRNA upstream 172803 18989181 ~ 19005165 (-) True LOC120552316
TU298817 other downstream 184431 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 191108 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 1940606 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 2020782 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2531171 16266303 ~ 16284735 (-) False drd3
TU298948 other upstream 122621 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 499213 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2019919 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 3173639 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3386405 22202783 ~ 22218366 (-) False smpx

Expression Profile