RNA id: TU299133


Basic Information

Item Value
RNA id TU299133
length 1487
RNA type TUCP
GC content 0.46
exon number 6
gene id G221048
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19315591 ~ 19326894 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACAATCCCAGCAACAAGATGAACGCCGGCACCCCTGTCACCAAGTCCCATATCAAAAAGTTTACATCCTGCTGTGTAGCTCTGTCACTCACgCTTTGCTTTGTGGTGTTTTGGACTCCTAACATATCCGAGAAGATCCTGGTTGATGTCATTGGAGTGGAGTACGCTTTCGCTGAGCTGTGTGTGGTCCCGCTCAaaattttctccttttttcccGTGCCAGtgaCGGTTCGGGCTCATTTGACTGGATGGCTCATGACCCTGAAAAAGACCTTTGTGCTGGCCCCCAGCTCGGTTCTCCGCATCATTGTCCTCATCACCAGTCTAGTTGTGCTGCCTTATATGGGGGTTCACGGGGCCACGCTCGGGGTTGGTTCCCTTCTGGCCGGCTTCATAGGGGAGTCGACAATGGTTGCCATAGCAGCATGCTATGTTTATCGACAACAGataactggctaaaatgtgcctgatacagactgaatgaatgaatgaggaaatgagagagcgctgtgtcagagggaggagactgagagaaactcgaagtttattgaagaaaacctgctcccgaccagAAAAATACTGAGATGTCCAATGAGCTGGTGGCGGAGGGCGAGGACTCTGCTCCGATGAGAGAGGTGTGCGCCAGGACTCCGATGGATGCCATCGAGGAGctccaggaggaggaggaggatgaggaggaacaGGAGTGAACTTTGACTGCAGGCGATGGTAAAGCCGACCTCTATGTGGAACTTTGCTGAAGAAGATACTGCCGAGTGTTACAGTgctggagaggagagaggacccGAGTATGGTTTGGTTTCAGAGGTTCTCCCATCAGACTAAACTTCGAATAAGAGTGACGAGGTCTTCTTCACGTCGACCTACACCCCATTAAAACGCACACTGTAAAGAAAGCCATGCACCTCCAAGTGTTCATTCATCTGTGTAAATACCGTTTTGTCTTCCGACCTTTTTCTTAGTTTTTATAGTTGCACCATCGCATCAGCCGGTGTAATGACCACTTTCATGGGTTTACTGGTAAACAAGGGAAAACGACACAGGACAACTTTTTCTCCTCAGCAGCAAGAATCAAACGTCTGTCGAGTGGTAGTGGAGTTGCCAAAATACAGAGTtcattattttatgttattttatcaaGATAAGGCGGCAAAGGCCTTGCTTGAATTCAAATATAGAAATGTTGTGGGACTTGTTGGGTTGTGCAATCGTATTTTACATACAACGGTGTACAGATTGTTTTATATAGGTAATGCAACGTGTATATTTAATAGCCCAGAGGGGTCAGGAATCCCTCGTTATATCATTGCTTGTGTTACAGAATACAATTATGATTGTTCACTTTTCATGCAGTCTGGGAGTCCATCTACTTTTGTTTTGCCAAGCATTTTCCTGGTAGTATTCAGACTGTCGTACgtattgtatatactgtataggcATTCTTATTTGGCAAATAAATTGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299030 lncRNA downstream 272375 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA downstream 272375 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA downstream 272375 19040265 ~ 19043216 (-) False G220972
TU298921 lncRNA downstream 485606 18829751 ~ 18829985 (-) True G220893
TU298915 lncRNA downstream 499213 18815906 ~ 18816378 (-) True G220888
TU299179 lncRNA upstream 45697 19372591 ~ 19374516 (-) True G221086
TU299181 lncRNA upstream 110072 19436966 ~ 19439539 (-) True G221088
TU299185 lncRNA upstream 119151 19446045 ~ 19446294 (-) True G221090
TU299191 lncRNA upstream 190478 19517372 ~ 19544392 (-) True G221095
TU299256 lncRNA upstream 273812 19600706 ~ 19600939 (-) True G221138
XM_039790862.1 mRNA downstream 101939 19196583 ~ 19213652 (-) True vps41
XM_039790858.1 mRNA downstream 120068 19182050 ~ 19195523 (-) False LOC120552661
XM_039790857.1 mRNA downstream 120100 19182050 ~ 19195491 (-) True LOC120552661
XM_039790357.1 mRNA downstream 196609 19112196 ~ 19118982 (-) True lypla1
XM_039790453.1 mRNA downstream 244975 19069163 ~ 19070616 (-) True LOC120552400
XM_039790486.1 mRNA upstream 148986 19475880 ~ 19514037 (-) True fam49bb
XM_039789579.1 mRNA upstream 191636 19518530 ~ 19585448 (-) True asap1b
XM_039789763.1 mRNA upstream 312962 19639856 ~ 19648801 (-) True chpf2
XM_039789762.1 mRNA upstream 331995 19658889 ~ 19666720 (-) True si:ch73-173p19.1
XM_039790437.1 mRNA upstream 562788 19889682 ~ 19908076 (-) True kif9
TU298948 other downstream 366110 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 684116 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 690793 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2440291 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 2520467 16783069 ~ 16795124 (-) False LOC120552205
TU299660 other upstream 1509403 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2663123 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2875889 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2875889 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 5636551 24963445 ~ 24967990 (-) False msl2b

Expression Profile