RNA id: TU299312


Basic Information

Item Value
RNA id TU299312
length 1888
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G221183
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19814070 ~ 19818115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttgtgtttcattgtaacaGAATCCCAAGACATGTCTATGCTCTTGATTGGGCCGAAGGGGGCAAAGGCCTGTCTGATGGTGTCCTCACCAAGCTCATAGTATATGGAGCCCACATACACCCGACACATGATGGCTAGGGCACGTTGCCGCTGAGCTGCCACCGATTGTAAAGGTGAGAGAGGATCTCCAAAGCCCATTGTCACTGCTGCCATCTGCAGGTTGGTGAGCTGTTGTTGCTGATGGGCGATTGTCTGCTTCACCAACACACTCTTAATGCTTTGTTCCATGGCATACTTCTTTGCCCTCTGAAGTGCCTCCTGCTGCTCTGGGGTAAGAGGCGGCAGGCCAAGCTTGGAGCCTGTGCCCTGTCCATTCTCCATCGTCAGAGCTTCACCTCCCTGCAATTCAGAAACAGCAATTTATGAAAAAACAACTGAGAAAGAGTTGGGAGCATTAACACCTGCCTGTATGTACATACATAACTATATTttcccagtaaaaaaaaattaataattccAGCGTTGCACATCACCTCACACAGCACATGTTATTTAATATTCTAGCATACAGGACATACACCCGGATTTAAACCAGGTGGGACGGGACAAACTCCTTACCTACGCAACCCGCTAATCGCTGGGTCCACCAGACTGAGGCAGGAAAGCCCCCAAGGGGAAGAGGACTGATGGGGAAGCTTTAACAATTCAACAAATTCtagggaaaataaaaaatgccttCAGACTAACAATAAGAGAAACAGGcagctagggctgggtaccgaacttcgatacttttaggcaccgaccgaattgcttCCTTAGCATCGAGCCTCGAAAAGTGCCTCTTCATTCACTACTAAAATTTCactacctaaggagtaaatttCATCAGTGATAGTGAGctaataagcatgcagcatgtttataccaagatctaataatgctcgTCATTGGATGTCTAACATTACACCACGTAGACCATGCAGAAAAACACTGACAGAAGGGCTCATGTGTGGTGTTGTATTTTAAATAGGCATTAAGTCAGTGTGCGTCACATAGGTGTAAATGAGCtggaaaatgatttaaaaaaaaagatgtgtaacgtaatatgtaatttatttttgttaaaaatggatttcgaaaaaataaattaaaaaagtatcgttCAGGAACAGTTATCGAATTCccggtataaaaaaaaattatgtgaacgatacccagccctacaggTAGCTGGCATTATTTTTACATTGCAATCTTCAAGCCCGTCTTTCCTTAAATTTTAGTCAAAGAAAACATGTAGAATTCTGCAGGCTCGGCACCATTGATTTATGTGATGAGTAATACCTTTTCCTTCCTATAAGGTTCCTAGAATTGAGTTCGCCAACGTTAGCGTGATGCACATGCATGCTGATGACGGAGCTCATCTTAACATAAGCTAGCTACATTATTAAATAGATAGCAACAGAGGGCTAAAGTTAAACTTTAGGCGAACACGGGATTAGCTAAAGTCGACATGGACATTAACTACAACCGATCTGTACTACACCTAAATGATGAATTGCATAAGTATTACCAAAAAGCACTATGTGATGAGCGAGGCCTGGTTTCGATTTAGCTTAGCTACGTTATCTTTGTTGCTAGCAAGGAGCTAGCTGATGTTAGCTAGGCATAAATTACAATGGCGTTTGAAGCAAGCTCTATTTTCCCCAGTGAGATACATTGTCATTTCACAGGCTATCTCGTAAAAATAAATTCCACTAAACATCGCGAATTACTTACGCAACCGCCACTGTAGCTGGAAACGTTAATGTTTCTATTTATCAAGGGATTTATTTACCGCAGTCTCTGTTACCGCCATGAAGCACACCTTCTTGAAAAGGCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299310 lncRNA downstream 2935 19808752 ~ 19811135 (-) True G221182
TU299276 lncRNA downstream 59562 19724099 ~ 19754508 (-) True LOC120551913
XR_005637931.1 lncRNA downstream 59752 19724873 ~ 19754318 (-) False LOC120551913
TU299275 lncRNA downstream 62776 19750105 ~ 19751294 (-) True G221150
TU299271 lncRNA downstream 83288 19679068 ~ 19730782 (-) True G221149
TU299468 lncRNA upstream 350566 20168681 ~ 20262155 (-) False G221287
TU299469 lncRNA upstream 354788 20172903 ~ 20262155 (-) False G221287
TU299476 lncRNA upstream 389623 20207738 ~ 20213258 (-) True G221293
TU299467 lncRNA upstream 440588 20258703 ~ 20262155 (-) True G221287
TU299546 lncRNA upstream 651031 20469146 ~ 20469453 (-) True G221359
XM_039789762.1 mRNA downstream 147350 19658889 ~ 19666720 (-) True si:ch73-173p19.1
XM_039789763.1 mRNA downstream 165269 19639856 ~ 19648801 (-) True chpf2
XM_039789579.1 mRNA downstream 228622 19518530 ~ 19585448 (-) True asap1b
XM_039790486.1 mRNA downstream 300033 19475880 ~ 19514037 (-) True fam49bb
XM_039789935.1 mRNA downstream 483516 19317254 ~ 19330554 (-) False ankha
XM_039790437.1 mRNA upstream 71567 19889682 ~ 19908076 (-) True kif9
XM_039789853.1 mRNA upstream 131866 19949981 ~ 19954961 (-) True cdv3
XM_039789854.1 mRNA upstream 131866 19949981 ~ 19954960 (-) False cdv3
XM_039789951.1 mRNA upstream 140169 19958284 ~ 19999250 (-) True tmem108
XM_039789952.1 mRNA upstream 140169 19958284 ~ 19999246 (-) False tmem108
TU299133 other downstream 487176 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 864589 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 1182595 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 1189272 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2938770 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 1018182 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2171902 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2384668 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2384668 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 5145330 24963445 ~ 24967990 (-) False msl2b

Expression Profile