RNA id: TU299644



Basic Information


Item Value
RNA id TU299644
length 886
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G221433
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 20795871 ~ 20821240 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACAGCAGCAGTGACATGATGTTCTATTTGAATTCCAAGACTGGGCAAAAtggcaaaaatacaaaataaaaactaaatacttcaattacattttatttatagtatcaaaatcataacaagagttatctcaggataTAATGGTcttgttcatatatatatttttttatcccaAAATCAATTAAGTTGATACGTGCAATCCTTGAATATGGAACCCTCACTTACTGTATTGTTGTTGTACGAATAGATAACTTGGATAactatttcatatttaattaaGTTATGTAAGATGGTAATCAAGTGTCAAAGGTCCAGTTTTTTAAGTTGtaaaccaaaaaagaaaaacgataTTTCAACCAGACAATCACTCTTTGAGAATCCAAAGACAATTTCCCAACCtcatattttcacatttaatttcaaaacatttcattctGCCAGCAGGTGGGAGTGATGGTCGGTCAGTTGAATATAACTAGATAGCAGCACTGGTACTTTACCCTGGCATACAGTACATGGCATGTTACCACAGATCTTTTAGATTCGATAAAAAGGTGCGTTgtcatattgtaaaaaaaaaacatttcacattaaGTCAAACTGGCCCACAGGTACAAAAAGAATATTCCGCAATAGCATattatttctttcttcttcttttttaacagCTGGTTATTATTGTGTCTCATATAATTTGATAATTAGTTCACATGTCTTCACCAACAGGCTCCACAGGCTATCTCAGGattggagctacactcctggaGCTGAactctgcagagagagagagaggagagagagagagagaccaacaTACTATGAGGACAGAAACATACAAACATGTGTGACATCCTCTCGCACAAATGCTGTACTTACTCAGTCACGTCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299625 lncRNA downstream 28910 20766599 ~ 20766961 (-) True G221417
TU299623 lncRNA downstream 33794 20761859 ~ 20762077 (-) True G221415
TU299601 lncRNA downstream 37097 20686190 ~ 20758774 (-) False G221400
TU299600 lncRNA downstream 63629 20686190 ~ 20732242 (-) True G221400
TU299578 lncRNA downstream 228087 20567559 ~ 20567784 (-) True G221385
TU299690 lncRNA upstream 91246 20912486 ~ 20912751 (-) True G221471
TU299691 lncRNA upstream 139388 20960628 ~ 20960830 (-) True G221472
TU299692 lncRNA upstream 141598 20962838 ~ 20963223 (-) True G221473
TU299717 lncRNA upstream 242273 21063513 ~ 21064001 (-) True G221498
TU299763 lncRNA upstream 367060 21188300 ~ 21188696 (-) True G221536
XM_039790579.1 mRNA downstream 37077 20747747 ~ 20758794 (-) False LOC120552480
XM_039790578.1 mRNA downstream 37126 20747747 ~ 20758745 (-) True LOC120552480
XM_039789573.1 mRNA downstream 54478 20735026 ~ 20741393 (-) False LOC120551976
XM_039790670.1 mRNA upstream 13938 20835178 ~ 20862688 (-) True LOC120552536
XM_039790186.1 mRNA upstream 43603 20864843 ~ 20872952 (-) False zgc:111976
XM_039790187.1 mRNA upstream 43603 20864843 ~ 20872252 (-) False zgc:111976
XM_039790185.1 mRNA upstream 43603 20864843 ~ 20872252 (-) True zgc:111976
XM_039790669.1 mRNA upstream 396440 21217680 ~ 21221667 (-) False rbis
TU299133 other downstream 1468977 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 1846390 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2164396 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 2171073 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 3920571 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 15057 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 1168777 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 1381543 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 1381543 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 4142205 24963445 ~ 24967990 (-) False msl2b

Expression Profile