RNA id: TU299660



Basic Information


Item Value
RNA id TU299660
length 743
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC120552536
representative False

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 20835178 ~ 20862688 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATAAACAGCTGCTTACCATTTAGGGCACTTCACAAAAGTTTTCTCCGAACTCCTCGAATCgagatttttttgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatcgcTCTTTGTCTGTGGATGTTCAGATATAGAAAGTCTGCACCGCTGGAAGCTCGAGTCTGGACTCTAGGTTTGCGTAATGCTGAGGCGTCTTCTGCTCAACATCTGGATTAACTATTTGGAGTCAGAGCTAGCGGCCATACACACAACTTTGACTGTCTAGCCTGTCTTTTGTAAAAACGACTGCCCTTTTTCTCTGGAATTTAACTCCTTTTGATACACCGAGTTTTGCGCATAGATTATGTATTCTTTAAAATGGGTGCGAACAATGGAAAACAGTATGGAAGCGAGGGTAAAGGGAGCTCAAGCATCTCTTCTGACATAAGTTCGAGCACGGATCACACACCAACCAAAGCTCCAAAGAATGTGGCTACCACCGAAGgCTGCTCCAAGGTGACATGCATCAGCCTCACCCAAGAGGCCTCCCTCCAGCTGTCCCCTCTGCACGGCCAGCAGATTTCCATCCACTACCTGGACATGACCGATTGTTTTTCCCTCGAGGATGAGGGCTTGCGGACTATCGCCTCCCACTGCCCCCGCCTGACACATCTGTACTTGCGCCGCTGCACCAGACTGACAGATGAAGCCTTGCGCCACCTGGCTCTCCACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299644 lncRNA downstream 15057 20795871 ~ 20821240 (-) True G221433
TU299625 lncRNA downstream 69336 20766599 ~ 20766961 (-) True G221417
TU299623 lncRNA downstream 74220 20761859 ~ 20762077 (-) True G221415
TU299601 lncRNA downstream 77523 20686190 ~ 20758774 (-) False G221400
TU299600 lncRNA downstream 104055 20686190 ~ 20732242 (-) True G221400
TU299690 lncRNA upstream 49821 20912486 ~ 20912751 (-) True G221471
TU299691 lncRNA upstream 97963 20960628 ~ 20960830 (-) True G221472
TU299692 lncRNA upstream 100173 20962838 ~ 20963223 (-) True G221473
TU299717 lncRNA upstream 200848 21063513 ~ 21064001 (-) True G221498
TU299763 lncRNA upstream 325635 21188300 ~ 21188696 (-) True G221536
XM_039790579.1 mRNA downstream 77503 20747747 ~ 20758794 (-) False LOC120552480
XM_039790578.1 mRNA downstream 77552 20747747 ~ 20758745 (-) True LOC120552480
XM_039789573.1 mRNA downstream 94904 20735026 ~ 20741393 (-) False LOC120551976
XM_039789576.1 mRNA downstream 94906 20735026 ~ 20741391 (-) False LOC120551976
XM_039789574.1 mRNA downstream 97131 20735026 ~ 20739166 (-) False LOC120551976
XM_039790186.1 mRNA upstream 2178 20864843 ~ 20872952 (-) False zgc:111976
XM_039790187.1 mRNA upstream 2178 20864843 ~ 20872252 (-) False zgc:111976
XM_039790185.1 mRNA upstream 2178 20864843 ~ 20872252 (-) True zgc:111976
XM_039790669.1 mRNA upstream 355015 21217680 ~ 21221667 (-) False rbis
XM_039790668.1 mRNA upstream 355015 21217680 ~ 21220892 (-) True rbis
TU299133 other downstream 1509403 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 1886816 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2204822 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 2211499 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 3960997 16874649 ~ 16875300 (-) True G220412
XR_005637957.1 other upstream 1127352 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 1340118 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 1340118 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 4100780 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 4193928 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile