RNA id: TU299765


Basic Information

Item Value
RNA id TU299765
length 2339
lncRNA type inter_gene
GC content 0.46
exon number 7
gene id G221537
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21190892 ~ 21231621 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaatatttttatttaactagTAAAACGCCCATTTCAAAAATAGAATGACAACAACGTATACTCATGGAACGGCCCGAACAATGATTGGCATAAGGCGTTTTCTTTATGTTAATTACAATCTTTCTTTTTGCCAAGCTTTTCTATTGTTTTATTGCGTATAGGGCTAAAACCAGAGGTCTTTTGTTAATTTTGCTCCTTTACAGGGCATGACACCAGGCTAACACTATAATCTGATCTGTTGACAGGTTCTTTTCTTACTAGGCTTCCTTGGCAGGGTAATTTATTCCTTGGCTTTGTGTATTAGCCACTATGGCTTAGCCCACAAGGCTACTGTGCGTTTTAAGCTTTAGCACTCGACACAAAGGGTTTTCAAAACAACACATGAAGGGATTTTCTTTACACATcacatttcattttgaaaagGAGGATAATTCCTCTCTATTGCTATATTATCAGGGAATCTGCAAAAATGCAGATTTTGGTTACAAAACATTATTTAGGAATCACTTAAGTCTTATTTTGCATAAGATAGCAAgctacaaaaacaaatacataatcCAAAATACTAAGAACACACAACATGGGATAACATGAAACATGAAAGATTTAAAGATTAGGCTGTAAATACAGAAATAAGCCATTGTCATGATATTCAGTATCTAGCACTAGCAGTAGCCTGTCCTTGTGCCCTTTGTTGCTGTACACTGAATTCAAATCAATAAGCAGGTCAGCGCCTATAGGCATCGTGTCTGCATGAGACTGTGCGtgccatgttgtgtgtgtgcatgtgtgccagAGGGGGATTTTCTGAGTCAATCGGTTGTGATGGAGGCGGCTGCAGCGTTTCATTAAGCTGCTGTGATGCAGAGGCTGGCAGTCAGTCAGAGATTACAGGCAGACTGGCAGTGGGATTGTATGTgtcctgtttgtctgtgtgtgcatcttaCCTCCCTCACAGATGGTGATGTAGTTTCATCCTCCCCCCTGCCTACTGCAAATAGCTTGTGGTTTCTGCATTCTGCTGGCTCGAAAGCACCATTTTGACACAAAGAAGACCTACACACACCCGTGTAATGTCTCTGAAAACATTGGCACCAGATGCAGCTTGTCTTATAGAATAAATTATGACAGGGCATCTTTGCTGGCTTATTACACACATAGAAATAGAGATTCCTGCAAGTGCTTCTCTCTCATTTATAGACTGCCCAGTGTCAAAAGCAATGGGTCACAGGaatttcatttcttttaaaaatttGATGGAGTATGTGTGTGCTTTATGGCTCACTGCAAAGAGAGGTAACTCTGAAtaaagggagggggagagggcaACAGGGCAGAGAGTGCAAAAAGGACTGAAGGGGGTATTACTGGAAGGAAGCACGGACAGAGCGACCCTTGAGAGGCTGGGGAGGGCGGTAGTTGTCCACCATACAGCACTCGGGCTCACCATCACCGGAGAAGAGCAGGCTGCGGAATTTGGCCATCTGGTCAGCGCTGACACTGATTGGCTCTTTGCAGACAATCCAGGTAACGCTCTCCAGCAGAGGAGGTGTGGTTAGGGAGCCATCATATGTCCAGTAGTCTAGGCAACCAGGGAGCAAGGTGGAAGGGTCAAAGCCACCAAAAGTGGTCTGCTGGCCTTTGGCCTTGATATCTTTAAAGGCGTCAATAATCTTCTGAAGACTGGCATTTGGACCACCAATCTTCAGGAATACTCCAACAACAGCAAGCCCATCAGGCTTGCTAGCAGCCTCACCAAAACTTGCGTATTTGGTGTTCCAGTGCACCAGATGGAGCTCAGCAGGATACTTGGTCCCGTTCACAGTATGTTCGGAGCCCTTGTCATCAGAAGCTCCCCAGTGGAAATGAAACTGCTTGAGCCTGTAGGTCCCTGAGATGGGGCCGTCTTTCAGAGTTGAGCTGTCGGTGTCATCTGCGAAGGTCACTTGGAAGGAATGTCCGTTGTTGAGGATTTCGAGGCAGGTGGACGGGTCGTACTTCAGGCTGAGCGGCTTCAGCCCCTTGTCGTATGATGATGCACCAGAGACGATGTCAATGGGAGACTGGCGGGGTCCATTGGCAATAGGGAAGTTATCAGCCCATTTGTCGGGTCCGTTGTTCTTTTCGTATCCCCAAGACATGGTAACAGTTTTGGATCTATGAGTATGTAGAGCTGTAATTCCCTAAAGCGAGTCGTTCCTCAGCGCAAAGCAGCTAGTGTCCTCCACCTGACAGCTGCAGACCTTATATAGGGTCCCCTgtgagcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcgggctGGTGTTAGCCACATGATGTCCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299775 lncRNA downstream 3623 21217727 ~ 21220926 (-) False rbis
TU299770 lncRNA downstream 3702 21217727 ~ 21220847 (-) False rbis
TU299771 lncRNA downstream 3702 21217792 ~ 21220847 (-) False rbis
TU299763 lncRNA downstream 35853 21188300 ~ 21188696 (-) True G221536
TU299717 lncRNA downstream 160548 21063513 ~ 21064001 (-) True G221498
TU299782 lncRNA upstream 27228 21258849 ~ 21264057 (-) True G221544
TU299788 lncRNA upstream 37279 21268900 ~ 21269103 (-) True G221550
TU299789 lncRNA upstream 37821 21269442 ~ 21270409 (-) True G221551
TU299807 lncRNA upstream 69863 21301484 ~ 21302047 (-) True G221567
TU299823 lncRNA upstream 88269 21319890 ~ 21320410 (-) True G221582
XM_039790669.1 mRNA downstream 2882 21217680 ~ 21221667 (-) False rbis
XM_039790668.1 mRNA downstream 3657 21217680 ~ 21220892 (-) True rbis
XM_039790186.1 mRNA downstream 351597 20864843 ~ 20872952 (-) False zgc:111976
XM_039790187.1 mRNA downstream 352297 20864843 ~ 20872252 (-) False zgc:111976
XM_039790185.1 mRNA downstream 352297 20864843 ~ 20872252 (-) True zgc:111976
XM_039790938.1 mRNA upstream 61163 21292784 ~ 21300494 (-) True pks1
XM_039790018.1 mRNA upstream 72168 21303789 ~ 21312913 (-) False LOC120552199
XM_039790017.1 mRNA upstream 72168 21303789 ~ 21312913 (-) True LOC120552199
XM_039790029.1 mRNA upstream 89679 21321300 ~ 21329803 (-) False acbd5a
XM_039790028.1 mRNA upstream 89679 21321300 ~ 21329803 (-) True acbd5a
TU299660 other downstream 361884 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 1897655 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2275068 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2593074 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 758396 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 971162 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 971162 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3731824 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3824972 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile