RNA id: TU299789



Basic Information


Item Value
RNA id TU299789
length 968
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G221551
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21269442 ~ 21270409 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cctagataaaatgtatagttttactccgttatatttccactaagcatcttcgttactcgttactaaaaaataaaattagaagaaatgtgtgcgactgcaataagggacgtttggcgaatcactgctcctagattgcattacgcacgctccgcatgccgcgcgctctatttcagcgcttgtttgttgcaaaccgccatggaagcatgagcacctactggagcaCCTACctgaggacctcccgttatcgtagaccaccaggctcgacataagcaatggcccgatggcccgcccggggccagtaaatacgtatgtcgggctggttgcagccacagtcactggtgtgtgccttacttcacgcagcacatgtagcctactgactggaaacgttaccgtggattatttaccgccgatggcgcagatgaacgctacactcgttactgtaagtaggtagcctacaataaaacctccatgattaaagagtcaataattatcaataacccacgtacctgttctacaggcagaaacacgtagaaacccatatctcagtctgatctgtctgcgctgtccactctcgtccaccgcgctgtgcaaacacagctctactctgcaaacagcgactttacaaacgagctaaaatgaaagatgtcagtttgtagtctaactgtttgtcttaatttgcaaccaatcttgaactttggacaaactattgtaaacgtagctgatttctaaacgagccatcctctcgctggagcggtaaacctatggatgtattttaagaccaaaacaaatacatgtggctacttaatatgcacgtgaatgacgcgttcttcattgttgacgatgttgccagttgtattatttagcaacagaatcgtcttatttcaaattaggcatacaggactaatctgagatcattttctagttaagtagcctatctagttatcattatggattttccatgtttttag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299788 lncRNA downstream 339 21268900 ~ 21269103 (-) True G221550
TU299782 lncRNA downstream 5385 21258849 ~ 21264057 (-) True G221544
TU299765 lncRNA downstream 37821 21224549 ~ 21231621 (-) True G221537
TU299767 lncRNA downstream 37821 21227053 ~ 21231621 (-) False G221537
TU299775 lncRNA downstream 48516 21217727 ~ 21220926 (-) False rbis
TU299807 lncRNA upstream 31075 21301484 ~ 21302047 (-) True G221567
TU299823 lncRNA upstream 49481 21319890 ~ 21320410 (-) True G221582
TU299861 lncRNA upstream 75289 21345698 ~ 21372691 (-) False G221604
TU299860 lncRNA upstream 94392 21364801 ~ 21372691 (-) True G221604
TU299875 lncRNA upstream 145542 21415951 ~ 21418007 (-) True G221616
XM_039790669.1 mRNA downstream 47775 21217680 ~ 21221667 (-) False rbis
XM_039790668.1 mRNA downstream 48550 21217680 ~ 21220892 (-) True rbis
XM_039790186.1 mRNA downstream 396490 20864843 ~ 20872952 (-) False zgc:111976
XM_039790187.1 mRNA downstream 397190 20864843 ~ 20872252 (-) False zgc:111976
XM_039790185.1 mRNA downstream 397190 20864843 ~ 20872252 (-) True zgc:111976
XM_039790938.1 mRNA upstream 22375 21292784 ~ 21300494 (-) True pks1
XM_039790018.1 mRNA upstream 33380 21303789 ~ 21312913 (-) False LOC120552199
XM_039790017.1 mRNA upstream 33380 21303789 ~ 21312913 (-) True LOC120552199
XM_039790029.1 mRNA upstream 50891 21321300 ~ 21329803 (-) False acbd5a
XM_039790028.1 mRNA upstream 50891 21321300 ~ 21329803 (-) True acbd5a
TU299660 other downstream 406777 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 1942548 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2319961 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2637967 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 719608 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 932374 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 932374 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3693036 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3786184 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile