RNA id: TU300069



Basic Information


Item Value
RNA id TU300069
length 321
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G221768
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21944370 ~ 21944690 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cgaaaatctaatctccaggtccattataacacttataaagagagacttcgcatttataatctggaactaagaaatgcaagacggtcctttttctctgacattattgccagaaacaataataattcacgtgctttgtttgctactgttgatagattaacaaaccctccagtaccggtagcatctgaactgttgtctaccaaggcttgcaatgactttgcctccttcttcacagacaaaattcagaaaattagacaaacagtcagtgcctccatattaagtacaggatatgtgttgtcacagtatgcacgcaaaacaaattcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299991 lncRNA downstream 111486 21832156 ~ 21832884 (-) True G221712
TU299984 lncRNA downstream 128647 21814496 ~ 21815723 (-) True G221708
TU299960 lncRNA downstream 212883 21731287 ~ 21731487 (-) True G221695
TU299875 lncRNA downstream 526363 21415951 ~ 21418007 (-) True G221616
TU299861 lncRNA downstream 571679 21345698 ~ 21372691 (-) False G221604
TU300100 lncRNA upstream 146851 22091541 ~ 22091753 (-) True G221793
TU300130 lncRNA upstream 169692 22114382 ~ 22120446 (-) False LOC120552473
TU300148 lncRNA upstream 279199 22223889 ~ 22246053 (-) False G221832
TU300146 lncRNA upstream 292124 22236814 ~ 22246053 (-) True G221832
TU300147 lncRNA upstream 292124 22236814 ~ 22246053 (-) False G221832
XM_039790878.1 mRNA downstream 26715 21876164 ~ 21917655 (-) True tmtopsb
XM_039790877.1 mRNA downstream 28330 21876164 ~ 21916040 (-) False tmtopsb
XM_039790164.1 mRNA downstream 224865 21716547 ~ 21719505 (-) True LOC120552274
XM_039790163.1 mRNA downstream 232754 21706905 ~ 21711616 (-) True LOC120552272
XM_039790162.1 mRNA downstream 233225 21706905 ~ 21711145 (-) False LOC120552272
XM_039789694.1 mRNA upstream 8955 21953645 ~ 21991347 (-) True tnk2a
XM_039789696.1 mRNA upstream 8955 21953645 ~ 21988802 (-) False tnk2a
XM_039789695.1 mRNA upstream 8955 21953645 ~ 21988802 (-) False tnk2a
XM_039789693.1 mRNA upstream 8955 21953645 ~ 21988802 (-) False tnk2a
XM_039789697.1 mRNA upstream 47599 21992289 ~ 22009088 (-) False tfr1b
TU299660 other downstream 1081705 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2617476 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2994889 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 3312895 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 45327 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 258093 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 258093 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3018755 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3111903 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile