RNA id: XM_039790569.1


Basic Information

Item Value
RNA id XM_039790569.1
length 3539
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC120552473
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22114382 ~ 22120611 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATGTTTACATACAATCAACATCTACACGGTAGATGATGGTGAATTCAGCATCCTGAGACAACTAATAAAAAAAGCTGAAAGTCTTCAATATACAGTTCATCTAAAATTTCTGTTGCTGCTGAACAAGCCCGCCCTGCCATCTACTCTCACTTCCTCACTCGAGCTGCACGAAAGGGGACAGAGACGACAGGCAGAGGAAAGATGTTAAGGCTCGAGGCCAACATGTTTCTCATGTACACTGTATATTACATGGTAAGAGATATCAGTTGCACCCTTTTGATCTGAGAGGAACATTTTATTCGAACAAAAGGAAGATAATTAAACTACAGCATTCCATGGCTACGACATCAGTGATTAATCGGCAGTTCTTTGTGTGACACAAATCACCTTCTGCAGTTTTACCAGGTGGACTATATGTTGAGAAACTGCAATTCTTTGTTCTAAAGAAGATTTTAAAATGGGTCGTGGAGTGAAAGAGGacaaaatgataccaaaaggAGGAACTGGATGTTTTAAACTGAGTGTTATTTTTCTCTTGCTAAATATCAGCAGTTTTCTTGTTCTGGTCACAGGATTTTCACTGAAGTATTGCCGAATCAGTTACAATGTCGCCATATGTTCCGGGAGTAAACTCACAACGGTTCCACAAGATATTCCCTCAACGGTGAACGGTTTGGACTTGTCTGTGaacaagattaaaaaaatacaagcaTCAGATTTCAAAACTCTATCAGTTTTGACGCAGTTAGACCTGAAACGCAATTTAATTGACCAGATAGCTCCAGGCACCTTTGCCAATCTGATTTCCCTCAAGAAGTTAaatctaaataataataaacttgtTCAACTTAGAGATGATCTTTTTGATGGTTTGAGCAACCTCACAGAGCTCAGATTGTACAGAAATCACATCAGAGCAGTGGCATCCACCTCTTTTAAATCCTTGACAAGCTTGACATTTTTGGACATCTCCAACAACAAACTGCACCACATAACACAAGTTCATACTATACTACAGCATCTGCCAAATCTACGGGAGCTGGTAGTCAAAAACAACGATTTAACCACTTTTCAGTCGTGGGAACTGACAAACAGCTCACTAAAACTTGCTTCCCTTGATTTGTCTCAAAATCCAATTGCAGTCTTTAGGATCACTGCAGATGTTTTTCCAAATCTCGCCTGGTTAAACATCGGCGGCTCTTCTACAAAGCTACGGATGAAATGGGACGTGCACAACAAGACTTTTCTTAGTCGAGTGTCTACTCTTGATATTAGCGGGCTTCAAATAACTTCTGATGACATGGAAACATTACGAGACaccttcaactcctcactgagTTCTCTGAGGATGAATGCAATGAAACATACAAACCTTTCAGCTGTAATCAACATTTCCTGCACCATCCCAACGTTGTCCGCACTCCAACTTCAACGGAACAGACTCTCTTATGTCCATTCAAATTTCTTCCAGTTGTGTATTAACGTAAAAGAGGTTGATTTATCaaacaatttaataaaacatattgATGACCAGGCCTTCAGATCTCTTCACGGTTTAAGGATCTTGAGTCTGAATCACAACAAACTCACATCTGTTCCAGGTGATTTGAGGAATCTACCAACTCTTGAAGAGCTGGATCTCAGCAAGAATAACATCAGCACACTTAAATGTAATGATTTCACCAAACTGACAAAGCTCAGAGAGCTCAGCCTTAATCAGAATTTTATCTCAGCTCTACAAGAGTGTGTTTTCGAGGATTTAATACGATTGCGAGTTTTAAAGCTACAGAACAACACCCTCTCCAAATTAAACGGTGCTTTCAAAAAGTACTTGCCCAATCTTAAACAACTGCGTTTGAATGGAAATAAACTGACGGCCATTAAACGTGGGGAATTTATGGGCTTGCAATCCCTCCAGAACTTGTCATTACATGAAAATCAAATAGAGGAAGTTGAAAATGGGGCTTTTATTGGATTGACTAATCTTACCGATATTCAGCTGCAatcaaataatattaaaaaaactgCACTAGACAAAGGGGCTTTCAATCATCTGATAAATTTAATAAGATTAGATTTGAGGGACAATCACATTAAATACTCCGACAGTTCACCTTTGCCTTATCCACCATTTTCTCAGCTGTCCCATCTGGAGACATTGGCTATTCCTGGACAGCACAGCAGGGGGAAGTCCAATCTGCCTAGCAACTTCCTGCAAGGTTTGACTAATCTTTTGGATTTTAGTGCCAGGAACATTCAACTTCTATCCCTGGCCAATGAAACGTTTAATTACACGCCTCGACTGCAAACGCTCGACATTAGCTCAAATGACCTTAAGGAGCTTTCTCCGGAATTGTTTTCCCCAATTCAAAGCCTTAAAAGCCTCTACGTATCTAGAACAAGTCTTTGGTCTCTAGATTTCCTTATAGATGCCAAACTAACTAAGCTGGAGTTCCTGCAGGCAAGAAAGAATGAATATTCAATTTTAACTGAGAAAGTATTCACTTCCACACCAGCTCTTGTTTACTTGGATCTTCAAGGCAATAGCTTCACGTGTGACTGCGATAACGCCTGGTTCAAAAGGTGGGCATTAaacgacacacaaacacaagtttTTGACGCCTACAACTTTGTGTGCAACTATCCTCCAGACCTCAAAAATACGAAACTGTTGGACCTAGACGTCCGGTCATGCACAGTGGACACTGGATTCATCTACTATGTCTCCACCACATTTACAATACTCCTGTTCATGGTGGTGTCCTTCACCTACCATTTCCTGAGGTGGCAGCTGGCCTACGCCTACTACTTCTTCTTGGCTTTGCTCTTTGAGACAAAGCATAAAAACAAGCAAGCTCATGATCAGTATGATGCCTTCATCTCCTACAACACCCATGATGAGCCATGGGTCATCAGAGAGTTGTTGCCAAAACTGGAAGGGGAGCAGGGCTGGAGATTGTGTCTGCACCACCGAGACTTCGAGCCAGGTAAACCCATCATAGACAACATCACGGATGCCATCTATGGAAGCAGGAAGACCATCTGTGTGATCAGTCGCAGATACCTAGAGAGTGAGTGGTGCTCCAGAGAGATCCAGGTGGCCAGCTTCCGTCTGTTCGATGAGAAGAAGGATGTGCTGATCCTGGTGTTTCTGGAGGAGATTCCGACCACTCAGCTGTCTCCTTACTACCGCATGAGGAAGCTGCTGAAGAAGAGGACCTACCTGAGCTGGCCTCGAGCAGAGGAGCACCCTGAACTGTTCTGGGAGAAACTGCGCCAGGCTCTGAATTCCAGAGAAGATCTCGGAGACAACAGGTTCCTCCTGGTGGACAGACCGTGATGGAAAGGAAGTACTACAGAGTTAGGTTTAGAGCCGCAGTCCATTGCTTTGAGTCTTCTTGTTGGTTTGTATTaccactagtctatatccatgaagttccacttccgggatagCTCTGGTGCCTCTGgcaaattccgccggatgtcacgcCAGATATCCGCtcccttccgctttctttgtgttgaaattttaaactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300100 lncRNA downstream 23332 22091541 ~ 22091753 (-) True G221793
TU300069 lncRNA downstream 170395 21944370 ~ 21944690 (-) True G221768
TU299991 lncRNA downstream 282201 21832156 ~ 21832884 (-) True G221712
TU299984 lncRNA downstream 299362 21814496 ~ 21815723 (-) True G221708
TU299960 lncRNA downstream 383598 21731287 ~ 21731487 (-) True G221695
TU300148 lncRNA upstream 103278 22223889 ~ 22246053 (-) False G221832
TU300146 lncRNA upstream 116203 22236814 ~ 22246053 (-) True G221832
TU300147 lncRNA upstream 116203 22236814 ~ 22246053 (-) False G221832
TU300154 lncRNA upstream 123196 22243807 ~ 22299575 (-) True G221837
TU300160 lncRNA upstream 179807 22300418 ~ 22301215 (-) True G221843
XM_039789698.1 mRNA downstream 103999 21994544 ~ 22011086 (-) False tfr1b
XM_039789697.1 mRNA downstream 105997 21992289 ~ 22009088 (-) False tfr1b
XM_039789694.1 mRNA downstream 123738 21953645 ~ 21991347 (-) True tnk2a
XM_039789696.1 mRNA downstream 126283 21953645 ~ 21988802 (-) False tnk2a
XM_039789695.1 mRNA downstream 126283 21953645 ~ 21988802 (-) False tnk2a
XM_039789531.1 mRNA upstream 74625 22195236 ~ 22200046 (-) True LOC120551932
XM_039790526.1 mRNA upstream 82156 22202767 ~ 22218381 (-) False smpx
XM_039790527.1 mRNA upstream 82156 22202767 ~ 22217459 (-) False smpx
XM_039789868.1 mRNA upstream 559080 22679691 ~ 22688402 (-) True LOC120552124
XM_039789869.1 mRNA upstream 559080 22679691 ~ 22688399 (-) False LOC120552124
XR_005637957.1 other downstream 105997 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 1252420 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2788191 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 3165604 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 3483610 18610236 ~ 18631475 (-) True G220833
TU300141 other upstream 82172 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 82172 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 2842834 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 2935982 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 3435862 25556473 ~ 25562540 (-) True LOC120552299

Expression Profile