RNA id: TU300154


Basic Information

Item Value
RNA id TU300154
length 1207
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G221837
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22243807 ~ 22299575 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagaaaatgaaagctcagatgggctgatctggaatcttctccttatgaggtcataaggagcaaggttacctcccctttctctgctttgcccggccagagaatttggcccgcccatgagagagaaagagacatcatggctttcaaacgagcaaaatggcagttggtcaaggccacacccctaccctccaccttgcccccccctctctcctcctcaatagctacagacacagaaatggcacatcctaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccaaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaatgactataaaaaagcatccaaagagcaccatgtcatgggacctttaaacttcaCACAGATATTAACAATCAGAAAGACTGTGCAGTCTTTGTAAACAGTCACATAGGACAGTGCTTTACGGCAAGTGCATCATTTATTTGTACATGTGCTTTTTTTAAGTATGTGGCAACACGGTGGAAAAAGGTGTTATTGTTTTCCCTGGTGGTCCAGTAAAGCCTTAAAGGCAGATTAATGCTCAACAGTCTTTTGAAATTGGACAGCACTGCTGGGTAATGCAGTCTGTTCCCTATATGTTCACAGTTTAAATGGTCCACACCGTGTCAAACACAACCTGAGAGAACAGCTCTCGGTCCACGTGGGGGATTTATTTGTTTAGTTCTTTGTCTTGCCAGGGGAGCTCACCGCTGTGGCTACCGTGCCGTGACCATCCACAGGCCCAGTGCCACGTTGGCTGCCAGCAGGGCGCTGCCCGCGAGCAGCAGGAAGAAACCGATCAGCTCACGCTTTTGACGGTCCGTTACCACGGTTACCAGCGTTGCCTCCAGCAGTGCGTTCAGCATCCACTGACCGTCGAGCGCGAAGCACGGCACGGAGTTCACTACTGCTAGCGCACCAGAGAGAGACACCACATATCTGAGGGACAGGAGGGTTAAGGAGGACAATACTACAGTATTAATTAAGTTTATTCTTAATCTTAAatacacacagtctctcacacacacacacactttaaaactTCTACTCCatgctggtttaaaaaaataaataataaattgtccaAGTAGTGAGATTGTTTCCCACTGATGTTTCCCTGGTG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300130 lncRNA downstream 123361 22114382 ~ 22120446 (-) False LOC120552473
TU300100 lncRNA downstream 152054 22091541 ~ 22091753 (-) True G221793
TU300069 lncRNA downstream 299117 21944370 ~ 21944690 (-) True G221768
TU299991 lncRNA downstream 410923 21832156 ~ 21832884 (-) True G221712
TU299984 lncRNA downstream 428084 21814496 ~ 21815723 (-) True G221708
TU300160 lncRNA upstream 843 22300418 ~ 22301215 (-) True G221843
TU300161 lncRNA upstream 7913 22307488 ~ 22308234 (-) True G221844
XR_005638025.1 lncRNA upstream 25698 22325273 ~ 22335484 (-) True LOC120552529
TU300182 lncRNA upstream 37500 22337075 ~ 22339870 (-) True G221857
TU300267 lncRNA upstream 659791 22959366 ~ 22960660 (-) True G221926
XM_039790526.1 mRNA downstream 25426 22202767 ~ 22218381 (-) False smpx
XM_039790527.1 mRNA downstream 26348 22202767 ~ 22217459 (-) False smpx
XM_039789531.1 mRNA downstream 43761 22195236 ~ 22200046 (-) True LOC120551932
XM_039790569.1 mRNA downstream 123196 22115085 ~ 22120611 (-) True LOC120552473
XM_039789698.1 mRNA downstream 232721 21994544 ~ 22011086 (-) False tfr1b
XM_039789868.1 mRNA upstream 380116 22679691 ~ 22688402 (-) True LOC120552124
XM_039789869.1 mRNA upstream 380116 22679691 ~ 22688399 (-) False LOC120552124
XM_039789870.1 mRNA upstream 380116 22679691 ~ 22688397 (-) False LOC120552124
XM_039789871.1 mRNA upstream 380116 22679691 ~ 22688396 (-) False LOC120552124
XM_039789867.1 mRNA upstream 391455 22691030 ~ 22696864 (-) True ggh
TU300141 other downstream 25441 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 26258 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 234719 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 1381142 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2916913 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 2663870 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 2757018 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 3256898 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 3431181 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 3528516 25828091 ~ 25834224 (-) False mynn

Expression Profile