RNA id: TU300182


Basic Information

Item Value
RNA id TU300182
length 2310
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G221857
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22337075 ~ 22339870 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTGTGGTGGTAGTGTTGGTGATCGTGGTGGTTTGGAGCGTTGTTGTTGAAGAAGTTGAGGTAACCGTTGCAGTCGTGGTGTTAATCTGGGCAGGAAGTGTACCATGCACAGTTGTAGTAGTTGTGGTGGAATTTGTAGCTTCAAGGGAAGCGTTAGCTGCTGTAGTTGTCAAATTGACTTCTGGTCCTTTGGTTGTCAGGTTGAAGTCGGTGGTTAAACTGCTTGCAGTTGAGCTCAGGTTAAAGCTGATTCCTGTGGTTTGATTGACATTGACGACGGTACTGACAACGGTACTGACAACAGTGGCCGCTGTGGTGAAGTTGTTGTCTTTGCTAGTTGTTGAGACGGTGTGGGTCACTCCTCCTGTGGTGTGATTTCCTGTCTGGTTGTTCAGTGGAGCAACTGTAGGTATAGTGGTGTTGTCGAAAACAGACGTCACATTTTCCGCAGTTGAGTTTTTGTGGTTGTTGCATTGTTAGGAGTTCCATCAACTTGTTTAACAGTGGTAgacattgttgtgtttttataagGGGCCGTTGTGTTCTGTTGTGTTTCCCTGATGGGTGCAGTGGTTACGTTATCTGTGGCTGTTTTGTTTTGAGAAACAGTAGTAGTGTTTATATTCTCAAGTGTTGTGTAATTGCTAGAGAGCGTAGTGACATTGTTCACCATTGTGTGATTGGGAGAAGCTGTAAATGTGCTTATTGTTGCGTTACTTGTAATTGTACCATTGGGTAAGTTCATATTCCTGTCAGCTATGGTTATGTTGTACTCTGTTGTGTAATTGTCGGAGGGTGTTGTGTAATTCTTGGTTGCCATAGTTACATTATACACTACTGTGTGATTGGGAGAAGTCGTAAATGTGCTAACTGTTGTGTTAGTGGTAAATGtactgttttcttttctgttgCTGCTGGCAGAAGTTACATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCCGGGTGTAGTTAGATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCCGGGTGTAGTTACATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCCGGGTGTAGTTAGATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCCGGGTGTAGTTACATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCCGGGTGTAGTTACATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCTGGGTGTAGTTACATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATACCGGGTGTAGTTACTTTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCTGGGTGTAGTTACATTGTACTCTGGTGTGTGATTGGTAGAAGGTGTAAATATGCCGGGTGTAGTTATATTGTATCCTGTTGTGCCATTCAGAGAAGGTGTATTTGTAGTTACATTGTACACTTTTGTGTTATTGGTTGAAGGTGGAACTGTAGTTACATTGTACAATGTTGTATCATTTGTAGAAGGTGTAAATGCACCGACTGTAGTTACATTGTATGCTGTAGTATCATTTGAAGGTTTAACCGTAGTTACATTGTGCTTTATTGTGTGATTGGCAGAATGTATAACTGTGTCAACTCTAGTTACATTGTACATGGTTGTATCATTTGGAGAAGATCTAATTGTAGTTACATTGTGTGCTGttgtgtgattggttgaatgtGGCACTGTAGTTACATTGTACACTGTTGTGTGATTGTTAGAATGTATAACTGTGCCGACTGTTGTTACGTTGTACTCTGCTGTGTGATTTGGAGACAATGTAGTTGTGTTAAGCTTTGAAACAATAAGAGCAGTAGCCATTTGTAGTGTTGAGTTGACAGAGGATAATGTTGTGTTTTGGTGTGCTGCGGTTgtgttttgcattgttgtattTTCAGTGGGTGTCAACAATGTTGTGTTATTAGATGAAGTTGTGTTTTGTACTATTGTACTGTTATAGACAGTCACAGTCGTGTTTTGTGAGCTGGTTTGGAGGACAGGCTGTGCTGTTGAGGACTGTGTACCGTTAATTGTTGTGAGTGGAGTAGTCATGTTAGGCTGAGCTGTTCCTTGTGACGTGTTTGTCTTTTGAACTGTTGGAGTATTTTCAGCCGCCGTAGTGTTGGTCACAGATGGTGTTAATGCTTTAGGAGTTGTAGTGCTGTTGGTCAGATTGGAAGGTTGCGTCATGCTTTGCTTGGTTGTGGAAGGCTCCGGAGGGCAGCTGTCAGTCAGAAGTACAGCAAGGCTCTCATTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638025.1 lncRNA downstream 1591 22325273 ~ 22335484 (-) True LOC120552529
TU300161 lncRNA downstream 28841 22307488 ~ 22308234 (-) True G221844
TU300160 lncRNA downstream 35860 22300418 ~ 22301215 (-) True G221843
TU300154 lncRNA downstream 37500 22243807 ~ 22299575 (-) True G221837
TU300146 lncRNA downstream 91022 22236814 ~ 22246053 (-) True G221832
TU300267 lncRNA upstream 619496 22959366 ~ 22960660 (-) True G221926
TU300269 lncRNA upstream 642094 22981964 ~ 22982351 (-) True G221928
TU300274 lncRNA upstream 699979 23039849 ~ 23040134 (-) True G221933
XR_005638061.1 lncRNA upstream 731084 23070954 ~ 23071831 (-) False LOC120552653
XR_005638060.1 lncRNA upstream 731084 23070954 ~ 23071535 (-) True LOC120552653
XM_039790526.1 mRNA downstream 118694 22202767 ~ 22218381 (-) False smpx
XM_039790527.1 mRNA downstream 119616 22202767 ~ 22217459 (-) False smpx
XM_039789531.1 mRNA downstream 137029 22195236 ~ 22200046 (-) True LOC120551932
XM_039790569.1 mRNA downstream 216464 22115085 ~ 22120611 (-) True LOC120552473
XM_039789698.1 mRNA downstream 325989 21994544 ~ 22011086 (-) False tfr1b
XM_039789868.1 mRNA upstream 339821 22679691 ~ 22688402 (-) True LOC120552124
XM_039789869.1 mRNA upstream 339821 22679691 ~ 22688399 (-) False LOC120552124
XM_039789870.1 mRNA upstream 339821 22679691 ~ 22688397 (-) False LOC120552124
XM_039789871.1 mRNA upstream 339821 22679691 ~ 22688396 (-) False LOC120552124
XM_039789867.1 mRNA upstream 351160 22691030 ~ 22696864 (-) True ggh
TU300141 other downstream 118709 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 119526 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 327987 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 1474410 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 3010181 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 2623575 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 2716723 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 3216603 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 3390886 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 3488221 25828091 ~ 25834224 (-) False mynn

Expression Profile