RNA id: TU300293


Basic Information

Item Value
RNA id TU300293
length 511
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G221950
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 23119778 ~ 23120288 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAAATCACTTGCACCTGGGAGCCAGAGaagactgactgactggttTTCAGATAAAGAGGCAGGACAGCAACAGGAGAAGAGGACATGGGAAAAGAAGAGACACATGGGAAGAGAGGCCATGGTGAACATGAGGGAGGCCTGAGAGATCAAGGAAGATGTGGAGATACGACAGAACACTTGGAATGAGCGGCGAAGCAGATGGGAGAtcagacaaagacacaaagggaaACAACCTTAGAGCGGCCTGAAGCTACAGTGAAGCAACCCAAACACCGACCGCTAGCGGAGAAAGTGGGAGAGTGTGGGACTCTCCCTTCCGCGTAAGTCCCGTTTGAGACCGGTGTTAAGTGGGGATAAACGTGATGAAGTGATAACAGTTGCTGAGGACGTGTTACTGGCCGGAGTTTTTCTGTTGCAGGTTATACCCGGGGAAGGCCGCACAAGGAGAGGAAGCTGGTTGCCAGTAGAAACCTGTGGACTTTGTAAAGTCAAGACTCCCGTTCTGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638061.1 lncRNA downstream 47947 23070954 ~ 23071831 (-) False LOC120552653
XR_005638060.1 lncRNA downstream 48243 23070954 ~ 23071535 (-) True LOC120552653
TU300274 lncRNA downstream 79644 23039849 ~ 23040134 (-) True G221933
TU300269 lncRNA downstream 137427 22981964 ~ 22982351 (-) True G221928
TU300267 lncRNA downstream 159118 22959366 ~ 22960660 (-) True G221926
TU300305 lncRNA upstream 136201 23256489 ~ 23256834 (-) True G221960
TU300307 lncRNA upstream 194400 23314688 ~ 23314893 (-) True G221962
TU300324 lncRNA upstream 281264 23401552 ~ 23402694 (-) False LOC120552322
TU300346 lncRNA upstream 552572 23672860 ~ 23673189 (-) True G221999
TU300348 lncRNA upstream 571125 23691413 ~ 23691962 (-) True G222001
XM_039790942.1 mRNA downstream 48881 23068720 ~ 23070897 (-) True LOC120552718
XM_039790941.1 mRNA downstream 198522 22912562 ~ 22921256 (-) True LOC120552717
XM_039790272.1 mRNA downstream 231547 22841027 ~ 22888231 (-) False LOC120552328
XM_039790271.1 mRNA downstream 237481 22841027 ~ 22882297 (-) True LOC120552328
XM_039790665.1 mRNA downstream 345994 22697027 ~ 22773784 (-) True LOC120552530
XM_039790844.1 mRNA upstream 8356 23128644 ~ 23308035 (-) False LOC120552656
XM_039790843.1 mRNA upstream 8356 23128644 ~ 23222054 (-) True LOC120552656
XM_039790845.1 mRNA upstream 8356 23128644 ~ 23220282 (-) False LOC120552656
XM_039790260.1 mRNA upstream 281255 23401543 ~ 23519526 (-) True LOC120552322
XM_039790262.1 mRNA upstream 281255 23401543 ~ 23452481 (-) False LOC120552322
TU300141 other downstream 901412 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 902229 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 1110690 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 2257113 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 3792884 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 1843157 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 1936305 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 2436185 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 2610468 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 2707803 25828091 ~ 25834224 (-) False mynn

Expression Profile