RNA id: XM_039790260.1


Basic Information

Item Value
RNA id XM_039790260.1
length 4233
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC120552322
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 23401543 ~ 23519526 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacttcctctctccctatctgatgcacacacacagacaagcttctttctctcacttcacCGCTCACTCCCTCGCTCGCTCTCAGTCGTCATTCTGTAACCGCACGGACGCGCTCCACTTTGGTACAGCTCCTGTGTATTTCCCAGCTATTCCGAAAAGCTCTTGTCTCTAACTCGCACAGCGCATTACACTCGCAAGAGATCCCTTCTGTTCCGGCGTGGGCTCAAACTGTACACAGAGAGCGGGATAATGAAAGAAAGGCACCAAAGAGGAAAGCAGGGTGAGAGAGGGAATTAAAAGAGGAGTGAAAGcagcaaaggaaaaaaaaaaaacagtctgctCTTGCGAAAAGGTGGGAGGACAGTTTGATTCAGTGATCATTTGGAATAAACTGGCTACGCCTCTGCTCTAAAGTGTCCCGCTAAAGGTGATGAGGCCATAAATCTCTGAGTGGCATCCTGACAGAGCCAAGAAAACTGCTTTGTGGGCACCGGCAcagccccctcccccacccccccacccattCCCCATAACCACCGTCACAAGTTGTTTCAGCGTGGCTCAGCTCTCAGCACTGGACTTTAACTTGGGGACCTGAACCTCACAGATCGCCAATGCTAACAAGGAACTGCCTGCTGCTGTTCCTCTGGATTCTTGTCGACGAAGGCTCAGTCTCTTGTTTACGTCCACCTACACCACCACTGGGACGGAGCAGGACGGGGAGGGAGCACGCCAGGAGCTTGGTGGGCCCGATGAGGAATGGGGCAGCTGGATTTCAACGGGTCAAAAGGGGCTGGGTGTGGAACCAGTTCTTTGTACTGGAGGAGTACATGGGGTCAGACCCGCAGTACGTGGGCAAGCTGCACACTGACCTCGATAGGGGCGAAAATGCGGTGAAGTACACTCTCTCGGGAGACGGGGCTGGCTCCATTTTCACAATTGACCAAACAACGGGGGACATCCATGCCTTAAGGAGTCTTGACAGGGAGGAGAAGCCTTACTACACCCTGCGCGCCCAAGCAGTTGACATGGACACCAATAGGCCCCTAGAGCCTGAATCAGAATTTGTCATCAAGGTTCAAGACATCAACGACAATGAGCCAAAATTCCTGGAGGGACCATATACGGCCAGTGTCCCTGAGATGTCACCAGTAGGGACATATGTGACGCAAGTGACAGCCACAGATGCAGATGACCCTACCTATGGAAACAGTGCTAGAGTGGTATACAGCATCCTCCATGGCCAGCCATACTTCTCTGTTGACCCCAAAACAGGTGTTATAAAGACAGCCTTGCCTAATATGGACCGAGAGGTGAAGGAACAGTACCAGGTATTAATCCAGGCCAAGGACATGGGGGGCCAGCTGGGGGGGCTCGCTGGGACCACCACCATCAACATCACTCTCAGCGATGTCAACGATAATCCACCCAGGTTCTCTAAAAGTTTCTTTCACCTACGAGTTCCTGAGTCTTCTGCCGTGGGGTCTGCTGTCGGTAGAATCAAAGCCCATGACTTGGACATCGGGAGAAATGCCGAAGTAGAGTACACCATTGTGCCAGGTGATGGAGGCGCCATGTTTGACATCACCACCAATGAACACAACCAAGAGGGGATGATCATTCTCAAAAGGCCCTTGGACTATGAAAGCAAGAAGGCATACACCTTCAAGGTAGATGCCTCCAATGCTCATCTGGATCCACGATTTCAAAGCTTTGGGGCCTTCAAAGACACAGCAACAGTGAAGATTAACGTTTTGGATGTGGATGAGCCCCCGGTGTTCAATAAGCCCTCCTATGTGATGGATGTGTATGAGGACACACCCGCGGGCACCATCATTGGAGCGGTGACGGCACAGGATTTAGATGCCAGCAGCAGTCCAGTCAGGTATTCCATTGACTGGAAGAGTGACTTGGACAGCTACTTTGACATTGATCCAGTGGAGGGAACGATTTCCACAAACGAACTCCTTGACAGAGAGAGCATCGCCCAGCACAATATCTCCATCGTGGCGACCAAACTTAATAGTCCAGTTCTGAGCAGTCGGGTGGCCGTCACCGTCCATGTGTTGGACATCAACGAGTTCCCACCGGAACTCTCCAGTCCATATGAGACCTTTGTGTGCGAAAATGCCAAAGTGGGACAGGTGATTCAGACTTTCAGTGCAAAAGACCAGGATCTACCGACGGCTGGACAACAGTTCTCCTTCAAATCACCAAAGGAAGACATGATAAACAAGAATTTCACCATCCGGGACTTTGGAAACAACACAGCTGGAATTGTGACAAAGCGGAGTGGCTTTAGACGGCGTTTGCACGAGATCTATTTCCTTCCTGTGGTGATTGACGATAATGGCTACCCTCCTAAGAGCAGCACCGGCACCCTGACCATCCGCGTATGTGGCTGCGAAGCAGACGGTTCCCTGCTAACTTGCAGCGCTGAGGCCATCTTTCTTCCCGTGGGTCTCAGCACTGGAGCTCTGATCGCCATCCTTCTGTGTATCATCATCCTGTTAGTAATCGTGGTCCTCTATGTGGGCTTGAGACggcaaaagaaaaaggaaactctCATGTCGTCCAAGGAGGACATCCGGGATAATGTGATCCACTATGACGACgaaggagggggagaggaggacaCGCACGCATTTGACATGGGGACGCTTCGCAATCCTAAGGTTGTCAAAGAGAACCTGTTCCGCAGGGACATCAAACCTGAGATGAAGAGAGGTCCCAGGCCGCCCGTCTCTCAGGACAGCGCCGACATCCGAGATTTCATCAACCAGCGTCTGAAAGAGCACGACGTGGACAACTCGGCACCGCCCTATGACTCCCTGGCCACGTACGCTTACGAGGGCGACGGCTCTGTGGCCGAGTCGCTAAGCTCCATCGAGTCCCTCGCCGTAGACCTCGAGGAGGACTATGATTACCTCAATGACTGGGGCCCCCGCTTTAAGACACTAGCAGGGATATTTGGGGAACAGTCAGAAACTCAGTCGGACTCAACCACCACGGAGAACACACATTGATGTTTTTCACAGACTCGAAAAGCAAATACGTAACAATGTTCTTTTGGTtggcgacacacacacacacacacacacacacacacacacacacacacacacacgttttacCATTGTTTTCCTCCCATGTTATctgttttcatcttttttccAGCTCACCGTTTTCTATTTTATGTGGTACTTtactaccctggaaatccagagttcttgcgagagcacaatttgaatttgctcagcgagtcactctggcattgagtaatgatgctcattaactatgcccttgtagccgagctgcaccaatcacatcggcgtatctgatataggcgggccacagtttaatctaccagttagctccgctggtagctaagcgtacgGGGCTCTGGATTCGTCACcccgtgttttttttgtgattggtcgtagtgttatccaatagcgtgcagtgagattttcaaatgcatgcttggtgcggcccctcgagttgggccattttcattactcaatgccagacccttaatctttcggatttgggtctggattttcAGGCTAGTGCTTTACCATGCTCAGTcccaaaattgtaaaaaaaaaaagaagaaaatggaaCATAAGGAAACATGATTAGATGAGCCAAGCAGCCATTCAATTACCTTTCAATTGAATGTTCTTGTCTTACGTTTTGTTTCCTCTTGGGGAATACGCATATATATGGAAATGTTGTCATTTCCTAGAACATCCTTAAAAGTGCCTCAATATAATTGTTCTTTCACTTGCTATTTCATGCCACATATCCAGTGTTGATCCTTACAACCCCACAGGTTAAGCTTATTCAGTCAGCATACTGTGCTCTGACTGGCTGAGGCATCTACCAAGACCAATGTCAAGTCTGTGGGGACAATGAAGTGGCCCGAGTTTGGCCAAAGATGTTGTGAATGTTATTTAttcttctatttatttattggctGATTGAGTTTGATTTGATTATTgtgtatttatctatttatctcTCAGTCATCaatctgtattttttattttggagaCACACAAGGGATTTTTGTAATTAAAAGGCCCACATGAAAATGTATGTTTCTGTTAGGTGGGTCCTGTGAATAGACTTGTACTAGAGTTGTAAAAAAATTTATTAGGGCTAAATACTGCAGTTCAGTCATGTAATAAACACCTTTTTCTTAAATAAACCACACTTGGAGAAGTTCC

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06804 CDH12; cadherin 12, type 2, N-cadherin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300307 lncRNA downstream 86650 23314688 ~ 23314893 (-) True G221962
TU300305 lncRNA downstream 144709 23256489 ~ 23256834 (-) True G221960
TU300293 lncRNA downstream 281255 23119778 ~ 23120288 (-) True G221950
XR_005638061.1 lncRNA downstream 329712 23070954 ~ 23071831 (-) False LOC120552653
XR_005638060.1 lncRNA downstream 330008 23070954 ~ 23071535 (-) True LOC120552653
TU300346 lncRNA upstream 153334 23672860 ~ 23673189 (-) True G221999
TU300348 lncRNA upstream 171887 23691413 ~ 23691962 (-) True G222001
TU300359 lncRNA upstream 303827 23823353 ~ 23823678 (-) True G222012
TU300387 lncRNA upstream 632953 24152479 ~ 24152762 (-) True G222037
TU300388 lncRNA upstream 648786 24168312 ~ 24168549 (-) True G222038
XM_039790844.1 mRNA downstream 93508 23128644 ~ 23308035 (-) False LOC120552656
XM_039790843.1 mRNA downstream 179489 23128644 ~ 23222054 (-) True LOC120552656
XM_039790845.1 mRNA downstream 181261 23128644 ~ 23220282 (-) False LOC120552656
XM_039790942.1 mRNA downstream 330646 23068720 ~ 23070897 (-) True LOC120552718
XM_039790941.1 mRNA downstream 480287 22912562 ~ 22921256 (-) True LOC120552717
XM_039790263.1 mRNA upstream 114157 23633683 ~ 23666857 (-) True cdh10a
XM_039789682.1 mRNA upstream 673852 24193378 ~ 24297851 (-) True drosha
XM_039789683.1 mRNA upstream 673852 24193378 ~ 24297850 (-) False drosha
XM_039789569.1 mRNA upstream 838083 24357609 ~ 24361216 (-) True mc4r
XM_039790194.1 mRNA upstream 1140585 24660111 ~ 24723840 (-) False rnf152
TU300141 other downstream 1183177 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 1183994 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 1392455 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 2538878 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 4074649 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 1443919 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 1537067 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 2036947 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 2211230 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 2308565 25828091 ~ 25834224 (-) False mynn

Expression Profile