RNA id: TU300348


Basic Information

Item Value
RNA id TU300348
length 550
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G222001
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 23691413 ~ 23691962 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccaaggctgaatttcgggaaagagacttcagaaacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggactatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtatattgggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactggtctatataaaagagacttcagatacagtattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300346 lncRNA downstream 18224 23672860 ~ 23673189 (-) True G221999
TU300324 lncRNA downstream 288719 23401552 ~ 23402694 (-) False LOC120552322
TU300307 lncRNA downstream 376520 23314688 ~ 23314893 (-) True G221962
TU300305 lncRNA downstream 434579 23256489 ~ 23256834 (-) True G221960
TU300293 lncRNA downstream 571125 23119778 ~ 23120288 (-) True G221950
TU300359 lncRNA upstream 131391 23823353 ~ 23823678 (-) True G222012
TU300387 lncRNA upstream 460517 24152479 ~ 24152762 (-) True G222037
TU300388 lncRNA upstream 476350 24168312 ~ 24168549 (-) True G222038
TU300389 lncRNA upstream 485778 24177740 ~ 24177987 (-) True G222039
TU300393 lncRNA upstream 497172 24189134 ~ 24192800 (-) True G222041
XM_039790263.1 mRNA downstream 24556 23633683 ~ 23666857 (-) True cdh10a
XM_039790260.1 mRNA downstream 171887 23401543 ~ 23519526 (-) True LOC120552322
XM_039790262.1 mRNA downstream 238932 23401543 ~ 23452481 (-) False LOC120552322
XM_039790261.1 mRNA downstream 239375 23401543 ~ 23452038 (-) False LOC120552322
XM_039790845.1 mRNA downstream 471131 23128644 ~ 23220282 (-) False LOC120552656
XM_039789682.1 mRNA upstream 501416 24193378 ~ 24297851 (-) True drosha
XM_039789683.1 mRNA upstream 501416 24193378 ~ 24297850 (-) False drosha
XM_039789569.1 mRNA upstream 665647 24357609 ~ 24361216 (-) True mc4r
XM_039790194.1 mRNA upstream 968149 24660111 ~ 24723840 (-) False rnf152
XM_039790196.1 mRNA upstream 968149 24660111 ~ 24723840 (-) True rnf152
TU300141 other downstream 1473047 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 1473864 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 1682325 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 2828748 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 4364519 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 1271483 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 1364631 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 1864511 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 2038794 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 2136129 25828091 ~ 25834224 (-) False mynn

Expression Profile