RNA id: TU300393


Basic Information

Item Value
RNA id TU300393
length 3667
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G222041
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24189134 ~ 24192800 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgatttttaaagatatttaatCGTGTCATATAAATATTCAGTACAAAATATCACGTTTTACAAAGCAGATTGATGAATAGCCAACGATGTAGGGCCCTCTTAACACTACCACGACCTCTCAAGTTGTTTCTACATTAACAAAACTCCACAGCTCAATCACATTGTCACCAAGATAATATACCGCAGTAGAGGTTGAGCCCCGGGGCCCACCGTGTCTACACATCAACAACCACAGGATCTACTGTATCTGGAGACAGAGGACATCAGCGTCACCATCTAGTTgcctcaaataaaaaaataaaaaccagaaGTGCCGGGGCTTTTTACGATGTGCAACATTTTTCTGTTATCTTAGCTGAGCATGGCGCCAATGCTTGGAGGCAATTATACTCTCCATAGGAAAACACAAGCACGTCTTCGTAATGGCGATATGCTGACACCCTGTATGAAGACAGAAAATAGTGAAGActgaagggagaaagaaaaataaatttgctgaGTGCTGCTGTCATGTTGATTTCCATTTGAGACCTCGCATTGGACCTTGAGGCAGAAAAGCAGCTTTGTTAGAGTGAAGGGTTTTTCAAACCCATTAATAGGTAATCATAGAAAACGTTGCTGCAGTCTGGAAATGGCCACTTAGTCTATGGGAGCACTAGCAAAGAGCTAATAAACCAAACAAGGGGGCGAAGAAAAACGAAAAAGAACACATGTATACAATAGCGGAGCGTTCAGAATCTTCCGACCGCTGTGTTTTCAATTGGATTGTTTAATGCACTGCGCCGATGTCGAGCCCGATTTCGGAGTACGCAGAGAATAAGTGTACCGCTGTGGCAATTACGCAATTGTGTTTTGATATTATGGTTTCAAATGTCTGATGAATGGCAGCCTCTTCACAGGTTGGCCTTTTGCTAAAGTGAGGGCAGAGCTTGTTTTGGctggcctcttttttttttttttttttctctctatcaTTCTGCCCTCCCAGTTCCCAGCCTTCGTTATTTcaagacaattttttttttcattgttaggGGGTCTTGAAGTAATTTGATgatattgcttttctttcttttgttttctaaatCGCTTTAAAAACTAAACCGTTGCTTGTTGTTGCCGCAGGACGTTTCGACCTCATCTCGGAGACGATGAAACACCTCTGGGTTTGTGCGCCTTATTCCGCACCAGTCAAAGGTCAGGcgcccccctttttttttttttttttatggaaaagGCTGTTCGTCCCGCTGGGAAatcagttaggtgaacacttgGACTGGCTTCATGTTCAACCCTACATACGGTACATGTAATGAAAGAGACTGAACAGTGTACAGAAATTAGAAGaatttttaaaaggaaaatacTGGTGTTCTTTGCTTTTTGGCACATTTCCAAAAACTGCTATGTTACATTATTATACATTCGACTGTGCAGGACCGAGCCCATCTCAGGACACGAAATGTTGATCAAACAAGTGTAAGAAAatcattttatatttctttattgAATGCTGTAGGTCACATTTTAGATggttctttctcttcttttgaaAAGAATCTGACCCCCAAATTTAAGAAAATCTAGACTCCAGGcgagaagatttttttttttttaatttaaggcaACTCTTTTGACTCATATTATAGACTTTGATGCTTATGTAAAAGCATAAAAGCTTTACAGATGGACCGAGTCCAAGTTTAAATGCGCATGTATAATTGTTCTAATTCCAGTCGACTTGGTACGTTGATTCAAATGTTACTTTTCCCTGTTGAAAATAAATTTGCATGATTAATTTTAATGCTAACCGTCCACGAGATGTTTAATCTAATGCCGTAGTTTCAAGCTCCAGTTAATGTGACTTAACACCATGCTGTACAGAGTGAaacatttacacatttccacGGTCGatatgagcaaaaaaaaataaaaataaagtccaACAAGACCAGTATTTTCCTCTGAGGATGGTGCACATTAGATTGGTAAATTTTTATCAACGTATCTTAGAAAATAACACTTATTTTGTGTACTTCATTTTTCAGCCAGTTGGctgcacagagaaaaaaaatggttcTGAAGACATTCAGCTCAACAAGGGAAATATTTGGTATTTGGCTCACCTCACACACAATGATCCAAGCTGTGTGGAGATGGAAATCCGATACTGCAAAAATAACATAACTAGTGTTTTTGCAGATGTTGGTTGTGGCTGTGAATTCCACGCAAGCTTTAAACGGCTTTTGTAACCTTTAAAGAACAATTAGCCACTCGTCGACCGAACACAAATTCGATTACGCAATCCCAACCCAACTTGTATCGAGATTTCTCATTTTTCTCATCAAGAGATGAGGATGCCAAAATGTTCTGGCTCGAGCAAAACTGTGGATAACGTGAGGCAGCCGTCGCTGAAAGAGGGGATCGTTTGGAATAAAAAATCCCTAGAAAACAAAACGACTGTACAGCGTATTGTATCATATTACCGTACGTACACAAGCTAAGATAGAACTCACAATATGCAGCATGTTTTTGTCCgagaaacactgaaaaataCATAGGCATATCTGTTGATTTTACAAAACTGCTTGTTGAACATGTCCATCAAACGCAGctttggagaagaaaaaaagaagaaaaaaaaaaaaaacggtatatTTGGGCCtcatgtatatacacacacacacaaaagtcttGACACAAAGTCTCTTTTCACTGCAccctggcaaaaaaaaaaaacgcaactAACACTGACTTGACACACAAAGCCTACGTCCGGTCACCGGAGGGACGACTGAATGGTGCGCGGTAGCGGTGAAAGAGCACTTGGACAAATGGTGCTCGTTTCTCGGTCCTTTTCGCCATTTTTCTCGCTACACGTGCGGCAAAAAATTGCACCAAAGTTTCACGCGCGTTTTGGATTTCCGCGCTTTTTCTCTCCTCGTGCCAGGCTCTCGTTAGGAATCCCTGTCGCTGTCGTCGTCGTCGCCCCCGTACATGTCCGCCAGTTTCTTAAACCGGGGTCCCCACTCGCTCAGGTAGTTGTAGTCCTGGTCGCCCTCTGTGGTCACCGAGTCGAGTGAGCTGAGGGACTCCGCCACGGAGCCGTTGCCCTCGTAGGCGTAGGTGGCCAGGGAGTCGTAAGGCGGCGCCGTCGGGTCGCTGTCGTTGTCCTGGAGCCTCTGGTTGATGAAGTCTCTCACGTCCCCGTTGGTGTCCCGGATCGGGGGCAGCACGGGCCGTCGCACCGCAGGGTAGAAGGTCTCGGGGACGATGTCCCTCCGCTGCTTGCTCTCCTCGATGGCCTCCGGGTTGCGCAGCGTGCCGATATCAAAGGCCTGAGTGTCCTCCTCTCCGCCCCCTTCGTCGTTGTAGCTGACGACGTTGTCTCGGACGTCCTCTTTGGAGATGATCAGAGGCTccttcttcctctgtctcctcagGGCAGCGAACAGCACCACGATCACTGCGGGGAACCACAACAGAGAGAACGAGTTACAGACTTTGGTGACTTTTTGCCGTTGTTTCTTTGCTCCCTCTCTTTGTTCTGAAGGCCAGTGACCGTCCAGGGGGAATTCGTGATGTTGCATGAGTGTTCACTGATGTTCAGGGACTTTGTCTGACTTTGTAGAAACAGACTCAGCTACCACAAGTATGCATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300389 lncRNA downstream 11147 24177740 ~ 24177987 (-) True G222039
TU300388 lncRNA downstream 20585 24168312 ~ 24168549 (-) True G222038
TU300387 lncRNA downstream 36372 24152479 ~ 24152762 (-) True G222037
TU300359 lncRNA downstream 365456 23823353 ~ 23823678 (-) True G222012
TU300348 lncRNA downstream 497172 23691413 ~ 23691962 (-) True G222001
TU300416 lncRNA upstream 416661 24609461 ~ 24609679 (-) True G222062
TU300456 lncRNA upstream 602066 24794866 ~ 24795350 (-) True G222088
TU300458 lncRNA upstream 604012 24796812 ~ 24797616 (-) False avl9
TU301971 lncRNA upstream 701772 24894572 ~ 24898219 (-) True LOC120552180
XR_005637972.1 lncRNA upstream 702218 24895018 ~ 24904700 (-) False LOC120552180
XM_039790263.1 mRNA downstream 522277 23633683 ~ 23666857 (-) True cdh10a
XM_039790260.1 mRNA downstream 669608 23401543 ~ 23519526 (-) True LOC120552322
XM_039790262.1 mRNA downstream 736653 23401543 ~ 23452481 (-) False LOC120552322
XM_039790261.1 mRNA downstream 737096 23401543 ~ 23452038 (-) False LOC120552322
XM_039790845.1 mRNA downstream 968852 23128644 ~ 23220282 (-) False LOC120552656
XM_039789682.1 mRNA upstream 578 24193378 ~ 24297851 (-) True drosha
XM_039789683.1 mRNA upstream 578 24193378 ~ 24297850 (-) False drosha
XM_039789569.1 mRNA upstream 164809 24357609 ~ 24361216 (-) True mc4r
XM_039790194.1 mRNA upstream 467311 24660111 ~ 24723840 (-) False rnf152
XM_039790196.1 mRNA upstream 467311 24660111 ~ 24723840 (-) True rnf152
TU300141 other downstream 1970768 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 1971585 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 2180046 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 3326469 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 4862240 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 770645 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 863793 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 1363673 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 1537956 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 1635291 25828091 ~ 25834224 (-) False mynn

Expression Profile