RNA id: TU301975


Basic Information

Item Value
RNA id TU301975
length 1570
lncRNA type inter_gene
GC content 0.43
exon number 9
gene id G223155
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24996626 ~ 25023914 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAACTGAGTGATACACCTCTAAAATCATCCAAACTCACAAACTTCACATCCATATCATCACACGTCATATACatctcttccttttttatttgtggTGTCTTTCTCAGTCAAGATAGCAGTTGATTTCAAGGGTCAGGTTTGATATAAGGAATCCAGCAACGTGACATGACCTTTTAAGAAGACCGTGATCAGCAAAATATCTTGTAATGAATGAAACCTTAATACAAGCAGAAATGTTTTGGgatagaacatttatttattgcttCATATTGCAGTTTTTGCAGATATACTATTATGTTTGAGCTAAGCTACAAGCATGGAGATGTGTTAATTCAGAGAGATTATTAAAGACTATAAGTGTCTacagtgttgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgttttcaaataTCGGCAGGAAAACGTTTTGCTCAGGCAGGCGACGATGCTTCACAGCTTTTTCATTTTGGCAGTGAGTTTCTTGACCCATTCAGCTTTGGGATCAACACAGACTGTTCCAGTACGTGTGGCGAAAATTATAGCCTCCACACAGTGTTTATGGGAATGTTGTTCTTCGTATGTGTTCCCAATCACGTCAGTGCTGACATTGTTGGCAATGGCCACCGTGCAGCATTTTAACTTTTTGCCAGGATGGCGATGGTTTTGTGCAGAGGCCTGGAAGCACAGACAGAGCAGGAGGAGAGTGAAAGACAGGACCTTCGTGGACATTTTGAAGAAAGGACAGGCTGGTGGACGGGTTTACTGATCAGGCTGCAACTACACAAGCTGATTGACTTTTGGATTATTTATTGAGAGCTTGATGAACTGACAAACGTCTGGATACGCCGATACTTAAAGGCCCGAAAAAGCAGAATCAGTCCCTCCGAGAGCTTGATGAACTGACAAACGTCTGGATACGCCGATACTTAAAGGCCCGAAAAAGCAGAAGCAGTCCCTCCGAGAGCTTGATGAACTGACAAACGTCTGGAGACGCCGATACTTAAAGGCCCGAAAAAGCAGAATCAGTCCCTCCGGTGTGTGCCATAGCCGTAAGAGGATTGGTGGAGAGGTTACAGGCctgacctgtgattggctgcagctgggGAAACCACCTGTTATAAGGAGCCAAGATGGCAGTGGTCTGTGGGCAGCAGGCATTCCTTGTCCTCCTAGTCTCCCAACTGGCTACACTTTTGCTTTGTGTAACTTTGGTTTAGATTAGatattgtttctgtttgtttagtAAAGGTGGACTACCAGCTGTGTTAATCCTGTTTTCtctagtggtgggcagatcgaggcttcgtgaaacaatgaaacagttgaagcaaattgcatattgtgtcgaggcttcgaaacaatctgacacccgtctcaacaatgacacctagtggtcacctgcaggtgttgatctgaaacaaccttgacaatgagccatttttttattattgtatttttctaatatgtgaagcttgcAACCTGtaggctcctcactgtgcataatgttattttggtcatgacaaaagaatattaataaaagaaatcaagccac

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637971.1 lncRNA downstream 42129 24928324 ~ 24954497 (-) True LOC120552179
XR_005637970.1 lncRNA downstream 51007 24928324 ~ 24945619 (-) False LOC120552179
XR_005637972.1 lncRNA downstream 91926 24895018 ~ 24904700 (-) False LOC120552180
TU301971 lncRNA downstream 98407 24894572 ~ 24898219 (-) True LOC120552180
TU300458 lncRNA downstream 199010 24796812 ~ 24797616 (-) False avl9
TU302017 lncRNA upstream 10162 25034076 ~ 25034364 (-) True G223184
TU302016 lncRNA upstream 10199 25034113 ~ 25034364 (-) False G223184
TU302038 lncRNA upstream 174432 25198346 ~ 25199030 (-) True G223193
TU302048 lncRNA upstream 233752 25257666 ~ 25333390 (-) True G223202
XR_005638001.1 lncRNA upstream 271545 25295459 ~ 25300407 (-) True LOC120552440
XM_039790943.1 mRNA downstream 28520 24963417 ~ 24968106 (-) True msl2b
XM_039789974.1 mRNA downstream 73454 24918372 ~ 24923172 (-) True emc9
XM_039790848.1 mRNA downstream 126792 24862510 ~ 24869834 (-) True psme2
XM_039790308.1 mRNA downstream 141738 24796589 ~ 24854888 (-) True avl9
XM_039790220.1 mRNA downstream 218834 24771906 ~ 24777792 (-) False LOC120552302
XM_039790082.1 mRNA upstream 11970 25035884 ~ 25086902 (-) True LOC120552232
XM_039790085.1 mRNA upstream 68663 25092577 ~ 25179568 (-) False LOC120552233
XM_039790083.1 mRNA upstream 68663 25092577 ~ 25179568 (-) True LOC120552233
XM_039790084.1 mRNA upstream 69851 25093765 ~ 25179568 (-) False LOC120552233
XM_039790538.1 mRNA upstream 158298 25182212 ~ 25197533 (-) True LOC120552454
TU301970 other downstream 28636 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 2778260 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2779077 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 2987538 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 4133961 20836297 ~ 20862665 (-) False LOC120552536
TU302014 other upstream 32679 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 532559 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 706842 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 804177 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 804177 25828091 ~ 25833625 (-) False mynn

Expression Profile