RNA id: TU302114



Basic Information


Item Value
RNA id TU302114
length 650
lncRNA type read_through
GC content 0.43
exon number 2
gene id G223239
representative False

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25658589 ~ 25721181 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATAAGTTAGTTTTATTGCAAACTTATGTCATATTAACTCTTCCGGCACatcaaatacaaataatgaaatggttaaaataaaacgAAATGATTTCAGAGTTGACAGAGTGCTGCAGGACAGAGTCCTAAAACCTGGAAAGGAGTTGTTGCTCTCCAGTCCCCTCGTCTCAAAGTTAACGGCTTTTTTGGTTAGACGTCTGAAATAAAGTCTGTGGTTAACACCAGCTTTAGAGATCCTGAAGCCTTTACGGGTCTTAGCAAGTGGCTAAATCAGAATACAGAGGCCGTTGGGACATTAAACACATCACTACTCACTGGGCTGCCTTCACAGCCTCGGGTTTACACTCGGGCTCCtgcaaaccatttaaaaaacaaaacaaaaaaagtgcgCCTAgcgatgtcacttcctgttgaaGTATCGTCAAagaaaacggaggctagctcgcccttCCTTCcacgcactaaccccccccaTTCTTGTTGGTTactggctggaacactgtttgttatgtttggtggtgcaggtcggccagtttgtttttgttggtgtttgtggagcctgggctgtctacagagaccgcgctTTTtagtgagatgtttgctgtatttgacaacaataaaaaaaagtagcctaaaaaatTGTGTGACATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302169 lncRNA downstream 21351 25636454 ~ 25637238 (-) True G223270
TU302163 lncRNA downstream 53806 25604270 ~ 25604783 (-) True G223269
TU302157 lncRNA downstream 76385 25578299 ~ 25582204 (-) True G223265
XR_005637983.1 lncRNA downstream 96153 25556586 ~ 25562436 (-) False LOC120552299
TU302129 lncRNA downstream 117147 25471720 ~ 25541442 (-) True G223252
TU302177 lncRNA upstream 5467 25722490 ~ 25725969 (-) True LOC120552722
TU302186 lncRNA upstream 22611 25739634 ~ 25742121 (-) True G223283
TU302192 lncRNA upstream 31456 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA upstream 31456 25748479 ~ 25749713 (-) False G223288
TU302196 lncRNA upstream 31456 25748479 ~ 25749011 (-) False G223288
XM_039790590.1 mRNA downstream 16075 25591480 ~ 25642514 (-) False rps6ka3b
XM_039790588.1 mRNA downstream 29174 25591480 ~ 25629415 (-) False rps6ka3b
XM_039790586.1 mRNA downstream 29177 25591480 ~ 25629412 (-) False rps6ka3b
XM_039790214.1 mRNA downstream 84624 25563886 ~ 25573965 (-) True eif1axb
XM_039790213.1 mRNA downstream 112485 25528232 ~ 25546104 (-) True map7d2b
XM_039790946.1 mRNA upstream 7677 25724700 ~ 25738940 (-) False LOC120552722
XM_039790593.1 mRNA upstream 25554 25742577 ~ 25765312 (-) True klhl15
XM_039790610.1 mRNA upstream 80262 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA upstream 84082 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA upstream 84082 25801105 ~ 25812783 (-) False lrrc34
TU302146 other downstream 96049 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 571881 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 690599 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3440223 22202783 ~ 22218366 (-) False smpx
TU302187 other upstream 13733 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 111068 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 111068 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 266571 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 324820 26041843 ~ 26042864 (-) False G223328

Expression Profile