RNA id: TU302146



Basic Information


Item Value
RNA id TU302146
length 541
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC120552299
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25556473 ~ 25562540 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGCTACAATATTGGCAGTTATACTGCTTTAAGTGAGCTTGGTGAACACGACATCATTGCTACAGCATATCAGAAGGACATTTATGCTAGCTAGCAtaacccccccctctctccatctctccatagGCTCCTCACTCCTAGCATCATATTTTCCTCCGTCTTTTCCCTGAGTCATTGTGTTAACACCGGCGGTCTCCTGTTTGGGTTTCGACGGCTCTCTGGATCTTGTCAGGTCCCTCTGATGAAAATATTCGACGACATTTCAAAATGACTGAAGTGGCTCCAAGCTGCACTGAGATGACAGCGCTGGCCCCTCCTCCTGCACCGCTGATCACCAGCAGGAATGCATCTCCTGCTCGATCACCATCCAGTCGCAACAGCCTTCCAGATCAGTtaaagaaggaaaggaaggacagAAGGAACAAAgacataaagaaagaaaataaagaattaaAGAGAGATAATTTaaagaaagataaaaagaagaaaaagaaaccgGTTTCTCCAGGTAATGTCTTGAATGGAAGTGAAAAATATCTGGC

Function


GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302129 lncRNA downstream 15031 25471720 ~ 25541442 (-) True G223252
TU302093 lncRNA downstream 163435 25347574 ~ 25393038 (-) False LOC120552443
XR_005638004.1 lncRNA downstream 168324 25382543 ~ 25388149 (-) True LOC120552442
TU302061 lncRNA downstream 170852 25316612 ~ 25385621 (-) True G223206
XR_005638000.1 lncRNA downstream 180972 25358648 ~ 25375501 (-) True LOC120552439
TU302157 lncRNA upstream 15759 25578299 ~ 25582204 (-) True G223265
TU302163 lncRNA upstream 41730 25604270 ~ 25604783 (-) True G223269
TU302169 lncRNA upstream 73914 25636454 ~ 25637238 (-) True G223270
TU302114 lncRNA upstream 96049 25658589 ~ 25717023 (-) False G223239
TU302179 lncRNA upstream 138257 25700797 ~ 25770143 (-) True G223277
XM_039790213.1 mRNA downstream 10369 25528232 ~ 25546104 (-) True map7d2b
XM_039790211.1 mRNA downstream 29347 25508623 ~ 25527126 (-) False zgc:112982
XM_039790210.1 mRNA downstream 29347 25508623 ~ 25527126 (-) True zgc:112982
XM_039790209.1 mRNA downstream 32885 25508623 ~ 25523588 (-) False zgc:112982
XM_039790208.1 mRNA downstream 32886 25508623 ~ 25523587 (-) False zgc:112982
XM_039790214.1 mRNA upstream 1346 25563886 ~ 25573965 (-) True eif1axb
XM_039790589.1 mRNA upstream 28940 25591480 ~ 25660731 (-) True rps6ka3b
XM_039790590.1 mRNA upstream 28940 25591480 ~ 25642514 (-) False rps6ka3b
XM_039790588.1 mRNA upstream 28940 25591480 ~ 25629415 (-) False rps6ka3b
XM_039790586.1 mRNA upstream 28940 25591480 ~ 25629412 (-) False rps6ka3b
TU302014 other downstream 469765 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 588483 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3338107 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 3338924 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 3547385 21990017 ~ 22009088 (-) True tfr1b
TU302187 other upstream 168216 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 265551 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 265551 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 421054 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 479303 26041843 ~ 26042864 (-) False G223328

Expression Profile