RNA id: TU302163


Basic Information

Item Value
RNA id TU302163
length 420
lncRNA type intronic
GC content 0.47
exon number 3
gene id G223269
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25604270 ~ 25604783 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtccgtgtagatgagagaagtaaagtgtatgcgcgttgtgcacacgctacattatggccaagcatgcgccccctaaaatagcatctgaataaggcgccactgactttagactagcgccactgactttagactagctccactgactttagactagcgccactgactttagactagcaccactgactttagactagcaccactgactttagaccagcaccactgactttagactagcaccactgactttagactagcgccactgactttagactagcgccactgactttagactagcaccactgactttagactagcaccactgactttagactagctccactgactttagactagcaccactgactttagactagcaccactgactttagactagcaccactgactttagactagcacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302157 lncRNA downstream 22066 25578299 ~ 25582204 (-) True G223265
XR_005637983.1 lncRNA downstream 41834 25556586 ~ 25562436 (-) False LOC120552299
TU302129 lncRNA downstream 62828 25471720 ~ 25541442 (-) True G223252
XR_005638004.1 lncRNA downstream 216121 25382543 ~ 25388149 (-) True LOC120552442
XR_005638000.1 lncRNA downstream 228769 25358648 ~ 25375501 (-) True LOC120552439
TU302169 lncRNA upstream 31671 25636454 ~ 25637238 (-) True G223270
TU302114 lncRNA upstream 53806 25658589 ~ 25717023 (-) False G223239
TU302179 lncRNA upstream 96014 25700797 ~ 25770143 (-) True G223277
TU302111 lncRNA upstream 104260 25709043 ~ 25717023 (-) False G223239
TU302113 lncRNA upstream 104260 25709043 ~ 25710601 (-) False G223239
XM_039790214.1 mRNA downstream 30305 25563886 ~ 25573965 (-) True eif1axb
XM_039790213.1 mRNA downstream 58166 25528232 ~ 25546104 (-) True map7d2b
XM_039790210.1 mRNA downstream 77144 25508623 ~ 25527126 (-) True zgc:112982
XM_039790597.1 mRNA upstream 64450 25669233 ~ 25683270 (-) False pdha1b
XM_039790598.1 mRNA upstream 64450 25669233 ~ 25683269 (-) False pdha1b
XM_039790600.1 mRNA upstream 64450 25669233 ~ 25683268 (-) False pdha1b
XM_039790599.1 mRNA upstream 64450 25669233 ~ 25683268 (-) False pdha1b
XM_039790596.1 mRNA upstream 64450 25669233 ~ 25683242 (-) True pdha1b
TU302146 other downstream 41730 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 517562 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 636280 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3385904 22202783 ~ 22218366 (-) False smpx
TU302187 other upstream 125973 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 223308 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 223308 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 378811 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 437060 26041843 ~ 26042864 (-) False G223328

Expression Profile