RNA id: TU302177


Basic Information

Item Value
RNA id TU302177
length 3104
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC120552722
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25722490 ~ 25738940 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTGCTTTGAATGGTGCCAGACACCAAACCATGATCAGATTATTAGTTACAGTATCTCAGCCCTCTCTCTGATTGGGCGCTTTGCTAATGCTGTTCCTCGTGCTTCTCACCAGGCGAGTCGGGACTCGTCGTACACCTTGGCTCAGCGGGGCCGCGTCACCGTGGAGACTCTCTGGAAAGAGCCTCCGTTTGGCAAAAAGAAGAAAGAGCAAACAGAGAGCAACGACAAGACCAGCTGAGACGGCAAGAAGACACACACCTGTCCATCCTGAGAGACTTTCACCTTCCagtaacacacactcacacctgtACGACTCTGATTAGTAttcacttaataataataattcatttaaGTTGTATATCTCAGAAACTTGGTGGTGTAAGTGTGTTTCTGAAACGCCTCCTGCCTCCTCTTGACTCATTCCTGAACACCGCGACCTCTTCCAAGAAGCGGAGTCTTTTCACATCCCGTTATTGAGATAAATGCAGTCCTCCTCCCCTTCGTCCTCTCTAATCATTTCTCACGACGTCAGCTCTTCCAGTTTCTGTTCTGTTCCGCGAAGCAGGTCACAGAGTCGAGTTTCTGCAGTGTTTGCTCTCTAACATTAAGGATGTCTGCCACCGATCCTTCcttattcttttatttgttcaaGCTGCACGACACAGTTTCACAGACTGTTACAGAGAGGTGTGACACTGTTAAAACTCAGTGTTATTTCATTATGTAgcactttaaaggtccagtgtgtaacactTTTAGTTGTTCGTTATCAAAAtcggtgttgcccgttcaccaacttctcctttttcatgaatatttacctccaccatcaattccaagtattccttttggcttgaaattttacatttgcatttgcattaactggggtagacgctccatattcatgctccatcttgaactACGTTAGCCGgtgagggacatacaggacgtactgctccacctttcacgttttctctgtcacatgataaactcccaggtgctgctaatgctgctaacggtatcgtagcttcctggtcccggcaagtttgaagaaggaaaacatggaggaccacatgtattcaaaatccaaatttcaggaacaggagtcttcttcttcttcttcttcttcgcccagaataagaataaggagattgaaaagagcaagagactggctttttgaagcgtgaaggctaccgtagctgtaataactactttgaactgcgtggcgcgagagagttgattgcgatatatgatctcaacgctagatgggagaaattcccacacactggaccttttaaaaagcagacaagtttgcaccaaagtgctttataaagacagatatatatatgtatacttaACATAAAACATATATGTATAGATGTTGTGGAAATAAAACTAGATTCAAATAGAAACAAGTTGAATCGCAAATGAAAACCCCGGAAATctgattaaaaaagaaaaactggttAAAcgcaattaataaaaaaaaaaataaaaaatcgtaAATACTCAGAGCTGAAACGGTAAGTAGTTTAACTGAGTAGTTATTCAACAGATGTTTATCAGCCACTATTTCGATAAATTAGTTAAGTAATGTGGTCGGTTTCAGCTTCCCAAATGTGAGATTTTGCTCATTTTTCTTGTCTTATTTGatggtaaactgaatatctttgggttctGGACTGTTGAAAAACATTTAGAAGACATCACGTTGCACGTTTAAAGTTGACCAATGATAGGAAATACTAATAGAAGGAAggttatttatgttttattctgttttatttgtCTCTTCTTCTGTTTGTAAGCAGAATATCTCCAAAAACCTGTGCACAGCTTTCAAAGAAAGTGAGTGGAGCGTGAGCGAttaaaattttttattatttttttattcaaaatgtaGAATTATTCCTTAAAGCCTTTCCTCTGTATTATGAAgccctgttttttttgttttttttattattattagccacATTAAACAATACCAGGACAGCTGTGACGAGCCAATATAATGATTCTTTTGGCCTTGTTCTCATGAGCACAAGTCACAAGTATTCATCTTCCTGAAGACACAACTAAATGTACCTGATAGTGTCATCAACAAACTTAAAGATGATAAGGTAACTGTTAACCGATTTCGTGCTGTAAAAGGGAAATATTAACTTAAGCCACATGACGTTAACAGAACTTAGTTAGCATGATTTTGCTAGCCTCAGACTGGTTTCTCCTGTGCTcacaggggaaaaaaataagaaaatcccccccccccccatgtccTTTTTAGGGGCTCTGTAAATATCTGGGCCACGTTCGGCCCATAGACTGTAGAAATATTGTTAATATGGTTTAGCACCGACAAAAAGTAGCAGCACGTGTTTTTAAAAACTGACACGGGGCTGCGTTGAACACCATGTCGTGTGCGCAAGCGTTCTGCCTTTTTATattgcgttccatttgtactccgATTTTCTGAGGTTAAAGTCGTAAACGTGCGCCCCCTGACATCGGATTTTGGAGCTCAGAACTCGGGACAACCACCGAGTACCCCGAGCTGAATATCCAAAAATGGCTGCCCCGTGCATCAACAgcagtgaaagctgtagtaacacaCAGTCCTGTGCATCTCTTATCTGTGGACCATTggtgattttagaccctttttaggggggggggCTCAAGCCACACGGTGCACACCGTTTGGAGGGTGATCTTGCCCTGATATCATTGGTTAGGACGTGTTTCatcttctctgtgtgtctgagtgacaCTGTGATCGTGTCAGGTGCAGCTTCCAACAGTTATATACAGTTATATATAcagttatatataaataatatctCAAGATAGATCATTCACTGTTTAGTATCTGTTTTCAAACATGTCGACATATTTATTTCCCCAGATGTATTCACGTTTCAGTTTGATGCTAATAATACTACACTGCTACAGTAAAGGGCCAAATAATGTGTGTACTATAGCTGGATTTACTCAGTAATGGGCTGAATGTGTTTGTTGTCCATGTCTAATATTGCtctgtgtatatactgtatgaggTTTTATCTTAACGCTGTGTAATTAAATCTGGCATCTGACTGAGGC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03015 mRNA surveillance pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302112 lncRNA downstream 1309 25711820 ~ 25721181 (-) True G223239
TU302114 lncRNA downstream 5467 25658589 ~ 25717023 (-) False G223239
TU302111 lncRNA downstream 5467 25709043 ~ 25717023 (-) False G223239
TU302113 lncRNA downstream 11889 25709043 ~ 25710601 (-) False G223239
TU302169 lncRNA downstream 85252 25636454 ~ 25637238 (-) True G223270
TU302186 lncRNA upstream 13665 25739634 ~ 25742121 (-) True G223283
TU302192 lncRNA upstream 22510 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA upstream 22510 25748479 ~ 25749713 (-) False G223288
TU302196 lncRNA upstream 22510 25748479 ~ 25749011 (-) False G223288
TU302220 lncRNA upstream 73752 25799721 ~ 25800693 (-) True G223301
XM_039790602.1 mRNA downstream 15847 25684062 ~ 25706643 (-) False acot9.1
XM_039790601.1 mRNA downstream 15847 25684062 ~ 25706643 (-) True acot9.1
XM_039790603.1 mRNA downstream 18516 25684062 ~ 25703974 (-) False acot9.1
XM_039790600.1 mRNA downstream 39222 25669233 ~ 25683268 (-) False pdha1b
XM_039790593.1 mRNA upstream 16608 25742577 ~ 25765312 (-) True klhl15
XM_039790610.1 mRNA upstream 71316 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA upstream 75136 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA upstream 75136 25801105 ~ 25812783 (-) False lrrc34
XM_039790604.1 mRNA upstream 75136 25801105 ~ 25812783 (-) True lrrc34
TU302146 other downstream 159950 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 635782 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 754500 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3504124 22202783 ~ 22218366 (-) False smpx
TU302187 other upstream 4787 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 102122 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 102122 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 257625 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 315874 26041843 ~ 26042864 (-) False G223328

Expression Profile