RNA id: XM_039790946.1


Basic Information

Item Value
RNA id XM_039790946.1
length 1519
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC120552722
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25722490 ~ 25738940 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGACTGACAACTCAAGTAAAATGCGCATGCGCCCTTAGGTATGGCTCTCTTGGCTTGCCGTAGAAAAGCGAAAGTCTCCTGGAAAGAGAATGTCATATGTGAAACTGGTGTCGCTGTGTGTCGCAGCTCCGGGTCTGACGGGCCTGCTGAGCGGCGCGGTGCTGGCTGCCACTGAGGGGAAGAAGAAGAGCTCACAGCCTGCTCTGAGCATCGATGAGCTGCCGTCGTTATACACCAGGCCTGAAGTGGAGCCTCGGTGTGTGGAGCCAGAGGCCGGGCCGCTGGAGGAGAGCGTGGCATCGCTCAGAAAAATGGCAGAACCGTACACAAACCAGTGCCAGCAAACGGGCCAAGCTGTAATGGAGAAAGTAGAGCAATTATACCAGACTGTGGAGCCCACACTCAACACCTCCGTAACAACAGTCACAgatgTGTACCAGTTCCTCAGTGACCCCCCTCCCGACCTCTACCCCAGTGTTGCGGCGGTGGGCTTCTCTGGCTTCCTGGGACTTTATTTGGCCAAAGgCTCCAGGGTGAAGCAGCTGGTGTTTCCTGTTGGACTCATGGCTCCTCTGTCACGAAAGGGTTGTGCTTTCCTGCAGGAAGTTCTGGCTCTGTGTTTGCTCTGCTTTGAATGGTGCCAGACACCAAACCATGATCAGATTATTAGTTACAGTATCTCAGCCCTCTCTCTGATTGGGCGCTTTGCTAATGCTGTTCCTCGTGCTTCTCACCAGGCGAGTCGGGACTCGTCGTACACCTTGGCTCAGCGGGGCCGCGTCACCGTGGAGACTCTCTGGAAAGAGCCTCCGTTTGGCAAAAAGAAGAAAGAGCAAACAGAGAGCAACGACAAGACCAGCTGAGACGGCAAGAAGACACACACCTGTCCATCCTGAGAGACTTTCACCTTCCagtaacacacactcacacctgtACGACTCTGATTAGTAttcacttaataataataattcatttaaGTTGTATATCTCAGAAACTTGGTGGTGTAAGTGTGTTTCTGAAACGCCTCCTGCCTCCTCTTGACTCATTCCTGAACACCGCGACCTCTTCCAAGAAGCGGAGTCTTTTCACATCCCGTTATTGAGATAAATGCAGTCCTCCTCCCCTTCGTCCTCTCTAATCATTTCTCACGACGTCAGCTCTTCCAGTTTCTGTTCTGTTCCGCGAAGCAGGTCACAGAGTCGAGTTTCTGCAGTGTTTGCTCTCTAACATTAAGGATGTCTGCCACCGATCCTTCcttattcttttatttgttcaaGCTGCACGACACAGTTTCACAGACTGTTACAGAGAGGTGTGACACTGTTAAAACTCAGTGTTATTTCATTATGTAgcactttaaaggtccagtgtgtaacactTTTAGTTGTTCGTTATCAAAAtcggtgttgcccgttcaccaacttctcctttttcatgaatatttacctccaccatcaattccaagtattccttttggcttgaaattttacatttgcatttgcattaactggggtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302112 lncRNA downstream 3519 25711820 ~ 25721181 (-) True G223239
TU302114 lncRNA downstream 7677 25658589 ~ 25717023 (-) False G223239
TU302111 lncRNA downstream 7677 25709043 ~ 25717023 (-) False G223239
TU302113 lncRNA downstream 14099 25709043 ~ 25710601 (-) False G223239
TU302169 lncRNA downstream 87462 25636454 ~ 25637238 (-) True G223270
TU302186 lncRNA upstream 694 25739634 ~ 25742121 (-) True G223283
TU302192 lncRNA upstream 9539 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA upstream 9539 25748479 ~ 25749713 (-) False G223288
TU302196 lncRNA upstream 9539 25748479 ~ 25749011 (-) False G223288
TU302220 lncRNA upstream 60781 25799721 ~ 25800693 (-) True G223301
XM_039790602.1 mRNA downstream 18057 25684062 ~ 25706643 (-) False acot9.1
XM_039790601.1 mRNA downstream 18057 25684062 ~ 25706643 (-) True acot9.1
XM_039790603.1 mRNA downstream 20726 25684062 ~ 25703974 (-) False acot9.1
XM_039790597.1 mRNA downstream 41430 25669233 ~ 25683270 (-) False pdha1b
XM_039790598.1 mRNA downstream 41431 25669233 ~ 25683269 (-) False pdha1b
XM_039790593.1 mRNA upstream 3637 25742577 ~ 25765312 (-) True klhl15
XM_039790610.1 mRNA upstream 58345 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA upstream 62165 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA upstream 62165 25801105 ~ 25812783 (-) False lrrc34
XM_039790604.1 mRNA upstream 62165 25801105 ~ 25812783 (-) True lrrc34
TU302146 other downstream 162160 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 637992 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 756710 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3506334 22202783 ~ 22218366 (-) False smpx
TU302229 other upstream 89151 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 89151 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 244654 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 302903 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 302903 26041843 ~ 26042864 (-) True G223328

Expression Profile