RNA id: TU302186


Basic Information

Item Value
RNA id TU302186
length 2428
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G223283
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25739634 ~ 25742121 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcagtaatggtttaataccagggtctctcctaagtggaatgcagccatcagtaatggttttgaacacacctgtgcttttcctactatgacatgtcaacatgtctgccgtgaaaaaggtctataaggGTTTCCCGATGGCCCCGGGGCAAGTTAAACGCTACTTTGGGCAAGTAAACAGAACAACCTACTCGCCAGTTCGGGCATTATCATATCATAATCATTTGATTTAAATGTGCCGTCGGCCAATCAAGAAATGAGTTGGCGCTTGAtgcttttgatattttttttaaatatcttttaactctatttatttattttttatgtttttgtttacattttgatgttttttttatggtttttttattaagctttatatatatatataaaaagaacatatatatgtatgttctTTTAACCCCCCCCCGCTTTTTTGGAcaggttttattttcaaacttttttcgacatttttccTCAGAATTTTGTTATATTGGGTCCAGTAAAAATTGACTTTGGGCAAGAAGaatttcttgaaaaaaaaaaaaaaccttagcgTTGAACCCTGGGTGCGTTTATTACCGTCTCCACCAACTTTTGCGAAATGTTCATTCACTAAATGTTAAATTTACAGGTTTTTCATCATTTCTTTTCAAATACAAATTTGTTTGTATAGGTGGCATGTTTATTTTGAGGGATCGGACATGAAAACACTCCGGTATCACCCTTTTTAAATTCACTGTTGTCTGTTTGTATCAACGATGTCCCTGCTgtccacacacaaacctctcgaGTCCCGAGCCGCAGCGTTACAGTGGTCATGTGATGCCACTGCGGTTTGTCCTTTTTTGGGGTGGATTCATCTTCAACGCCTCCTCAGCAGTGAGAAGTTGTGTGTTAAACTGTGGACTTCATAATGCATCTTTGTTTTCAAAGGGGGGGGAAATGTTTTCAGAAGATACAGTAAATGCAGAAGGGCTGCGACTAATGATCATTATATCAATGTATTGTTTAGTCAATTAAATATCAAataattgttgaaaaaaaatgatttccCAGAGACCAAAGTGACGTCTtaaaatgtctcgttttgttcGGCCAACAGTCGAAAACTCCAAGATCTATTATTTACTATCCTGTcggacaaagaaaagcagcaaatcctcagatttgagaagctggaatccAGAAAATGTTTTGGTTATTGCCGCTTGAAAAAAATGtctgattatcaaaatagttccACGTGCTTTCAATCGGCTTATCGTCGCAGCTCTAATATGCTGCCATCTGTAGCTACGTTTCATTTTACAAACCTAAACTAATCATAACCTGGAATACAGAAGCTATATTAAAATAAGGACCACCAAGTAAAAGGGAAAATAAACATTGCTCATAGTCTCCATTTTTCAGgtccaaaacatttcagaccctttttttgtttgtttttttccaagatgtttcTTTTCCTAGTCAAATCTAATTTTCAACTCCAAGACTTTCAGAAAAATGCATAGGCCTCAAAAACTGGCCAGTGGGGgggacaccccccccccaaaaaaaatatcttttcaTAATGATTAATGAGAAATATTAacggtttaaaaaaacatcccGAAACACCTGTGATGTTTTGAACAACACAGGAGAATAAAATTTCCCTTTTACATAATttaagacatttgcaccataacttgatgcagaaaaggcacaaattgttgcagaaaaaattCCCTTCCCcaaatgttaaaacaaataaccTCACTAATGAACCCAGAGCCGGCCCGACCCATAAGCGAACTATAAGCGGCTGTTTAGGGCCCCGTGGTTACCAGATGGGGGGGCCCCCAAGagtgcttgaaatgtcccacaatagagctcataactcagccggtctatttaaagatagcgttgctgctaataggtctcacattagtctttaaatgcgtatttgtacattatgagtgcttaaactaatatttacaatacacaagttggtttagtgccaaTATGTTACAATTTGGAGAGTCCCCAAACCAtatcctgcttagggcccccaaaaagCCTAGGGCCGGCCCtggttgaacccaaagttacgtcCTTGGAAAAGCGTGATCACAGTGTCAAAGGCCGGTCTGGTTGGTAAACCGGCCTCTTTAACTTCCTTAAGTCCCTTTACGTCTCTTCTGTGTCGCTGTACTCTGCAGCCGATATCCTGAACATCACATCTGCCACTCTGCAGTCCTCTCGctgctcatcctcctcctcctcctcctcctctcatgtTGCTGTTTAAAAGAAGAAACGTGTAACCGTTAAAGTACTACTGTCCGGATTTATGGCACATCCAGTCATAGCGCAGCATCCTTTAGTCCACCAGTCTTCAGTCTGCCAGTAGGAAAACAGAATAgcggattaaaaaaaaaaacacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302177 lncRNA downstream 13665 25722490 ~ 25725969 (-) True LOC120552722
TU302112 lncRNA downstream 18453 25711820 ~ 25721181 (-) True G223239
TU302114 lncRNA downstream 22611 25658589 ~ 25717023 (-) False G223239
TU302111 lncRNA downstream 22611 25709043 ~ 25717023 (-) False G223239
TU302113 lncRNA downstream 29033 25709043 ~ 25710601 (-) False G223239
TU302192 lncRNA upstream 6358 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA upstream 6358 25748479 ~ 25749713 (-) False G223288
TU302196 lncRNA upstream 6358 25748479 ~ 25749011 (-) False G223288
TU302220 lncRNA upstream 57600 25799721 ~ 25800693 (-) True G223301
TU302226 lncRNA upstream 66643 25808764 ~ 25896644 (-) True G223303
XM_039790946.1 mRNA downstream 694 25724700 ~ 25738940 (-) False LOC120552722
XM_039790602.1 mRNA downstream 32991 25684062 ~ 25706643 (-) False acot9.1
XM_039790601.1 mRNA downstream 32991 25684062 ~ 25706643 (-) True acot9.1
XM_039790603.1 mRNA downstream 35660 25684062 ~ 25703974 (-) False acot9.1
XM_039790600.1 mRNA downstream 56366 25669233 ~ 25683268 (-) False pdha1b
XM_039790593.1 mRNA upstream 456 25742577 ~ 25765312 (-) True klhl15
XM_039790610.1 mRNA upstream 55164 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA upstream 58984 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA upstream 58984 25801105 ~ 25812783 (-) False lrrc34
XM_039790604.1 mRNA upstream 58984 25801105 ~ 25812783 (-) True lrrc34
TU302187 other downstream 750 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 177094 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 652926 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 771644 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3521268 22202783 ~ 22218366 (-) False smpx
TU302229 other upstream 85970 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 85970 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 241473 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 299722 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 299722 26041843 ~ 26042864 (-) True G223328

Expression Profile