RNA id: TU302220


Basic Information

Item Value
RNA id TU302220
length 917
lncRNA type intronic
GC content 0.40
exon number 2
gene id G223301
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25799721 ~ 25800693 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtcgaaccctcggccgctgcgtcaaggagtaaacctccatatatgggcgcgcgcatCTGAGTTCATCCCATACTTGATAAAACTGCCAACATATTGCTCAGTTTTATAATCAACTTCCAGTGGAGCTGTATCGCGATTATATAATCATATCTGTCGTTCAAATGAAtgttgtgcagtagaaaatgaaagatggatagctcagttggtagagcgggcgcccatatatagaggatTACCCCTTGATGcagtggccgcgggttcgactccgacctgcagcccttttctgtatgtcatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccccctccctccctctctctctctctctctctctctcctttcatgtcttcagctgtcctatataaataaaaggcctaaaatgcccaaaaaagtaTCTACAAACAAATAGAAAATTAATGAGATGAGCTCATAGACACTCAATATTAAActggtcataaaaaaaaataaaaagtgttcCTCCttgcccacagatacagtttgCCCAGTTGTCCAATGAAATTGTGGAACACAGTTCATTTCATTGAACGTcaacttgacttttttttaataataattatcaaTGCCATATCCTACATATAGAAATCGGAAACTTGTTTCAATATTTAATAGTTAATTTCAGCCCCATCTGTCAGCCCTACGTTCTGTTTTTCTTCTAACCAGATGTGGAGGGTGTCAGTTCATAGTAAAACTATGTTTTACAAGATAAGCTGGGCAACATGGATCTGAATTAGGCCATAATTAATCTACAGGTAAAGACTGTTCTTGACAACAAAAGATATCACATCAAGTGACATGATAATGCGATTATAACTCTGTGAAATGCAATCATTACTTTAATcaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302179 lncRNA downstream 29578 25700797 ~ 25770143 (-) True G223277
TU302192 lncRNA downstream 50008 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA downstream 50008 25748479 ~ 25749713 (-) False G223288
TU302196 lncRNA downstream 50710 25748479 ~ 25749011 (-) False G223288
TU302186 lncRNA downstream 57600 25739634 ~ 25742121 (-) True G223283
TU302226 lncRNA upstream 8071 25808764 ~ 25896644 (-) True G223303
TU302228 lncRNA upstream 23669 25824362 ~ 25826846 (-) True G223305
TU302240 lncRNA upstream 114564 25915257 ~ 25915749 (-) True G223314
TU302244 lncRNA upstream 127946 25928639 ~ 25930103 (-) True G223318
TU302246 lncRNA upstream 132304 25932997 ~ 25935547 (-) True G223320
XM_039790593.1 mRNA downstream 34409 25742577 ~ 25765312 (-) True klhl15
XM_039790946.1 mRNA downstream 60781 25724700 ~ 25738940 (-) False LOC120552722
XM_039790602.1 mRNA downstream 93078 25684062 ~ 25706643 (-) False acot9.1
XM_039790601.1 mRNA downstream 93078 25684062 ~ 25706643 (-) True acot9.1
XM_039790603.1 mRNA downstream 95747 25684062 ~ 25703974 (-) False acot9.1
XM_039790607.1 mRNA upstream 412 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA upstream 412 25801105 ~ 25812783 (-) False lrrc34
XM_039790604.1 mRNA upstream 412 25801105 ~ 25812783 (-) True lrrc34
XM_039790608.1 mRNA upstream 412 25801105 ~ 25811819 (-) False lrrc34
XM_039790606.1 mRNA upstream 412 25801105 ~ 25811659 (-) False lrrc34
TU302187 other downstream 60837 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 237181 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 713013 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 831731 24963445 ~ 24967990 (-) False msl2b
TU300142 other downstream 3582172 22202783 ~ 22217549 (-) True smpx
TU302229 other upstream 27398 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 27398 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 182901 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 241150 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 241150 26041843 ~ 26042864 (-) True G223328

Expression Profile