RNA id: TU302228


Basic Information

Item Value
RNA id TU302228
length 2314
lncRNA type intronic
GC content 0.39
exon number 2
gene id G223305
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25824362 ~ 25826846 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctggtgtgtgggaacattttggatttcacgttacctatgatgaaataaaacaatatagaactgccactgtgtgcacgttttgtgcaacatgcattcaatatgctaattttagctatatatcatatgctgaagtatattctggagtgttaaagaaaaaataagaaccgtactgaaccgaaaaccgtgaccctaaaaccgtgatacgaaccgaaccgtgggttttgtgaaccgtaccacccctattttttatatattaaaggtatagtggaggattttctttttccgggtggatcatcaagactattggtcctcctggttgtcaatcattctggtgctatgtttacgtaaggccgttgTACGTGCACGTCCCTAGCTtccaggtgtatatgtgtggtgagcttgaGCTTcggtttcagccattcattgaagcattgaagcttttgggagaatatttcacacgctggcgtgcgctaaaagcacaggttgggcttcccactgatgcctcagtcgtgAAGTTTCTACtccacaggtaaagtttggcgtgctatttggagaaatccatttaaaatccctgctagtgaaagttgatgtaagctatgattagcgatgctagccctggcacaagtcgcgcaccgcgcacacacggtaaacatctcaatttgtgaaaaagtgcaaaattttcttttggaaagtaggcttgtatgagccatgccgacagcaacttgtaaacagtgcactctcgtgcacacgtttaataggcgagTGTTGCGCAggtgcatttttttcaaaaagtacagagggcggttcttttctaaaattcgggaaaatcctccacaatacctttaagtGTTAGTTAGTTTTTCTTAGGGCCAGGTATAATGTCTCAGAAGTATGCCGCTacatatactatacatacaAAAAGGAGAGTAGCCatgatgtttaatgtttaatctttGTGCTGCTTTAGTGTTGTTGATGTGAAGCAGTTACAGCACAGCGCCGTCTCTCACGTCATCATGTCAACATCACAAAAGTTGACGGAAAATTCGTGCTGTCTCCTTTTTCCAGCTAGAGATACTATAGAGATATtatagattatatatattatatagaaaaaaattaaaaactaaaattgAAATGATCAACGGtcacaagacctatagactaatacaagacctatagactgatacaggacctatagactaatacaggacctatagactgatacaggacctatagactaatacaagacctatagactaatacaagacctatagactaatacaagacctatagactaatacaggacctatagactgatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactgatacaggacctatagactaatacaggacctttagactaatacaggacctatagactaatacaagacctatagactaatacaggacctttagactaatacaggacctatagactaatacaagacctatagactaatacaggacctttagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactgatacaggacctatagactaatacaggacctatagactaatacaggacctatagacggatacaggacctatagacggatacaggacctatagactgatacaggacctatagactgatacaggacctttagactaatacaggacctttagactaatacaggacctatagactaatacaagacctatagactaatacaggacctttagactaatacaggacctatagactaatacaagacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactgatacaggacctatagactgatacaggacctatagactgatacaggacctatagactgatacaggacctatagactgatacaagacctatagactaatacaagacctatagactaatacaggacctatagactaatacaggacctatagactaatacaagacctatagactaatacaagacctatagactaatacaggacctatagactaatacaggacctatagactaatacaggacctatagactaatacaagacctatagactaatacaagacctatagactaatacaggacctttagactaataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302220 lncRNA downstream 23669 25799721 ~ 25800693 (-) True G223301
TU302192 lncRNA downstream 74649 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA downstream 74649 25748479 ~ 25749713 (-) False G223288
TU302196 lncRNA downstream 75351 25748479 ~ 25749011 (-) False G223288
TU302186 lncRNA downstream 82241 25739634 ~ 25742121 (-) True G223283
TU302240 lncRNA upstream 88411 25915257 ~ 25915749 (-) True G223314
TU302244 lncRNA upstream 101793 25928639 ~ 25930103 (-) True G223318
TU302246 lncRNA upstream 106151 25932997 ~ 25935547 (-) True G223320
TU302245 lncRNA upstream 110947 25937793 ~ 25939788 (-) True G223319
TU302248 lncRNA upstream 129441 25956287 ~ 25956599 (-) True G223322
XM_039790610.1 mRNA downstream 11579 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA downstream 11579 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA downstream 11579 25801105 ~ 25812783 (-) False lrrc34
XM_039790604.1 mRNA downstream 11579 25801105 ~ 25812783 (-) True lrrc34
XM_039790608.1 mRNA downstream 12543 25801105 ~ 25811819 (-) False lrrc34
XM_039790611.1 mRNA upstream 274042 26100888 ~ 26110027 (-) True cldn11b
XM_039790127.1 mRNA upstream 283561 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790129.1 mRNA upstream 283561 26110407 ~ 26148020 (-) False si:ch211-230g15.5
XM_039790128.1 mRNA upstream 283561 26110407 ~ 26147104 (-) False si:ch211-230g15.5
XM_039790716.1 mRNA upstream 496647 26323493 ~ 26345733 (-) True rmc1
TU302187 other downstream 85478 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 261822 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 737654 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 856372 24963445 ~ 24967990 (-) False msl2b
TU300142 other downstream 3606813 22202783 ~ 22217549 (-) True smpx
TU302229 other upstream 1245 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 1245 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 156748 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 214997 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 214997 26041843 ~ 26042864 (-) True G223328

Expression Profile