RNA id: TU302240


Basic Information

Item Value
RNA id TU302240
length 435
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G223314
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25915257 ~ 25915749 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taggaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtggcactatctttgtggggacccttcattgacataatgcattccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccttaaccatcacaactaaatgcctaactttaacccttaccctaaccttaaccatcacaactaaacgcctaaccttaacccttaccctcaccttaaccatcacaactaaacgcctaaccttaacccttaccctcaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccttaaccatcacaactaaatg

Function

GO: NA

KEGG:

id description
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302226 lncRNA downstream 18613 25808764 ~ 25896644 (-) True G223303
TU302228 lncRNA downstream 88411 25824362 ~ 25826846 (-) True G223305
TU302220 lncRNA downstream 114564 25799721 ~ 25800693 (-) True G223301
TU302192 lncRNA downstream 165544 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA downstream 165544 25748479 ~ 25749713 (-) False G223288
TU302244 lncRNA upstream 12890 25928639 ~ 25930103 (-) True G223318
TU302246 lncRNA upstream 17248 25932997 ~ 25935547 (-) True G223320
TU302245 lncRNA upstream 22044 25937793 ~ 25939788 (-) True G223319
TU302248 lncRNA upstream 40538 25956287 ~ 25956599 (-) True G223322
TU302255 lncRNA upstream 65711 25981460 ~ 26042864 (-) False G223328
XM_039790947.1 mRNA downstream 81317 25817429 ~ 25833940 (-) True mynn
XM_039790610.1 mRNA downstream 102474 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA downstream 102474 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA downstream 102474 25801105 ~ 25812783 (-) False lrrc34
XM_039790604.1 mRNA downstream 102474 25801105 ~ 25812783 (-) True lrrc34
XM_039790611.1 mRNA upstream 185139 26100888 ~ 26110027 (-) True cldn11b
XM_039790127.1 mRNA upstream 194658 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790129.1 mRNA upstream 194658 26110407 ~ 26148020 (-) False si:ch211-230g15.5
XM_039790128.1 mRNA upstream 194658 26110407 ~ 26147104 (-) False si:ch211-230g15.5
XM_039790716.1 mRNA upstream 407744 26323493 ~ 26345733 (-) True rmc1
TU302229 other downstream 81033 25828091 ~ 25834224 (-) False mynn
TU302230 other downstream 81632 25828091 ~ 25833625 (-) False mynn
TU302187 other downstream 176373 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 352717 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 828549 25056593 ~ 25086708 (-) False LOC120552232
TU302261 other upstream 67845 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 126094 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 126094 26041843 ~ 26042864 (-) True G223328
TU302290 other upstream 138770 26054519 ~ 26059062 (-) True G223351
TU302289 other upstream 144248 26059997 ~ 26130122 (-) True G223350

Expression Profile