RNA id: TU302244


Basic Information

Item Value
RNA id TU302244
length 1379
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G223318
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25928639 ~ 25930103 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCACCAAGGGCAAATTCAACGCATGGTCTATTTATTGCTTTTTTctgattgtgattgtgattgtgaCATGAACATCAGACTGACCTTCTGGTAAATGGAGGCGTTGCGAGCGCAGGTGGCCATCCAGACCTCCTTGTAGAACTGGTCACTGATGGGATCAGACACGTCGATGGAGGGATCGGTGTGAGCGCCCAAAATCATcctgagacagagacagagagacagagacagagagagagagagagacaaagagagagagagagacaaatagagacaaaaagagggacagagagagagacagagagagagagagacagagagagacaaagagagacaaaaaagagggacagagagagagagagacaaagagacaaaaagagggacagagagagagacagagagagagagacagagagagacaaagagagagagagacagagagagacaaagagagagagagacagagagagacaaaaagagggacagagagagagagagagagagagagagagacagagagagacaaagagagagagcgagacagagagagacaaaaagagggacagagatagagagacagagagagagagagagacagagatagacaaaaagagggacagagagacacagagagagacaaagagacaaagagaaagagagaggcaaaaagagggacagagagagagagagacagagagacagagaaagagagacagagagagagagacaaagagagggacagagagagacagagagagggacagagagagagacagagagagagagggacagagagagagagacaaagagagggacatagagagacagagagagggacagatagagagacagatagagagacaaagagagacagagagagacagacagagagagagagagacagaccgagagagacagtgagagtgagagagagagagacaaagagagggacagagagagatacaaagagagagagacacacagagagagacagagagacaaagagagagacagagagagagagagacagtgagagagaaaaaaacatgtcaggAGAACATAAAACTTGACACAAGATGGACTTAGGATGTTGtgtgttagaatttttttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacaaacaatacaaGCTGAAGgggaaaatgagagagagagagagagagagagaggggaggggagggggggaggaggggaaatGCTGAAACTCTGCAGGATATTGCGAGCTGTGATGTTTGGTAACAAGAAGCAGAAGTGATGAGGACACGGACACGGTTCCTTAAAGAAGACAAAAGTCTGATCGGTCATCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302240 lncRNA downstream 12890 25915257 ~ 25915749 (-) True G223314
TU302226 lncRNA downstream 31995 25808764 ~ 25896644 (-) True G223303
TU302228 lncRNA downstream 101793 25824362 ~ 25826846 (-) True G223305
TU302220 lncRNA downstream 127946 25799721 ~ 25800693 (-) True G223301
TU302192 lncRNA downstream 178926 25748479 ~ 25749713 (-) True G223288
TU302246 lncRNA upstream 2894 25932997 ~ 25935547 (-) True G223320
TU302245 lncRNA upstream 7690 25937793 ~ 25939788 (-) True G223319
TU302248 lncRNA upstream 26184 25956287 ~ 25956599 (-) True G223322
TU302255 lncRNA upstream 51357 25981460 ~ 26042864 (-) False G223328
TU302260 lncRNA upstream 55070 25985173 ~ 25997932 (-) True G223331
XM_039790947.1 mRNA downstream 94699 25817429 ~ 25833940 (-) True mynn
XM_039790605.1 mRNA downstream 115856 25801105 ~ 25812783 (-) False lrrc34
XM_039790611.1 mRNA upstream 170785 26100888 ~ 26110027 (-) True cldn11b
XM_039790127.1 mRNA upstream 180304 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790129.1 mRNA upstream 180304 26110407 ~ 26148020 (-) False si:ch211-230g15.5
XM_039790128.1 mRNA upstream 180304 26110407 ~ 26147104 (-) False si:ch211-230g15.5
XM_039790716.1 mRNA upstream 393390 26323493 ~ 26345733 (-) True rmc1
TU302229 other downstream 94415 25828091 ~ 25834224 (-) False mynn
TU302230 other downstream 95014 25828091 ~ 25833625 (-) False mynn
TU302187 other downstream 189755 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 366099 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 841931 25056593 ~ 25086708 (-) False LOC120552232
TU302261 other upstream 53491 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 111740 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 111740 26041843 ~ 26042864 (-) True G223328
TU302290 other upstream 124416 26054519 ~ 26059062 (-) True G223351
TU302289 other upstream 129894 26059997 ~ 26130122 (-) True G223350

Expression Profile