RNA id: TU302246


Basic Information

Item Value
RNA id TU302246
length 2512
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G223320
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25932997 ~ 25935547 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTgaagggatctctgaggagctatgatcgAGGATAGAGGGTgaagggatctctgaggagctatgatcgAGGATAGAGGGTgaagggatctctgaggagctatgatcgAGGACAGAGGGTgaagggatctctgaggagctatgagcgaggatacagaGAGTCCGAGGAGCTATGATCGAGGATACAGAGAGCAGACTTCCCGGAAGGGAATCgtttatgatttataaaattatGCCAACAAAttataggctattttaatagcttagtattctatgcaaaaaaaaaaggtatgtataaaggctttaggccgccttACGCAATATATGTAGGGGgcccctgctctgtctctctttcagttaaggggtccttggcttaaaaagcgttgaagacccctgctttagagGAAAGGaggtctcatccctctaaaaacacatttcctcgtttcctctcgTCACAAATTATTTCCTTGCGTCTCTCCCGTGTTTCCTCGGTGGGAcagactaagacgcgaggaagggaagcaagtggaGGAACcagggatgcaatttaaggaaAGTGAGATTCAGCAACTATGTGTTATTTAAGCGAGTGGGATGTTGTTCATGTGCATTCAGCGGCACAACCTTCACAACCTCAGCTGATGCCATTTTGGAAGTCATTTTGGCTGCCATCGCTGCAAATTCAGGCGGTAAACAGAACAGCAAACTCAAGCTCTTTTTCTAAACAATGAGAACATTTCACGCTCTGGGAGTTTCCTCTCAGGCTGCAGCTGAATCCCATCTTCTTCTGGGACCAGCAGCTGTGACTCCAAACATTATCTTAAAGGAAAACTACGGTTTGTTACACCTAAGGGTTTACTTTTGAAACTCCTGATATTGGTCCTAAAATAGTAAtagcaaaaatatattttttttggtcGAGGTTTgaaatagagctgcaaagattaatcaattaatcgattagttgtcaactattaaatgaatcgccGAGTATTTGATCATatattaatcggtttgagtcatttattataaaaaaaattaaatctaaaatgtgaatgttttgagtttcttctctcctctgtgacagtaaactgaatatctcggagttgtggacaaaacaggacatttgaggactttttgggaaacactgatccaaatttttcaccgttttctgacattttttagagaccaaacaactaatccgttcatccagaaaataatcaacagatgaaAATAATCGGTAGTTCCAGCGCTTTTGTGAAGTGAGCTGAGTCGATACTAGAAAGTGGAGTTAAAACCCTGCAGGCCACTGATTGGTCCGAGAGAATTCACTCTTCACGGGACATCTTGCGCGAACAGACATTTCTAAATAGCCAAGCGACCGTCAATACTATATTATACTATAATATTTGAAATAATGGCAGCCTGCAAAACTACGGCGTACCGTTGATGGAGTGCAGACGCCCCTCTTGTTTGTTTGCTGATGAAAGGATTTTCAGAGTGTCGCGTTGAAGTGCCGTGACAGTTTCACTCTCTGGCGCTATGGCGATCAGTTAAGAATCCCGCCTActtgtggccggttagctcagttggtagagcaggcgcacatgtgcagaggtttattcctcgatgcagaaggGTCCAGAAGGTGgcggttttcctgcatgtcttctccatctctctcgctttcctatccaataaaataaaaaaaatccaatgaaggcagaaatgcccaaaaaataaaaagaatcccACCcagtatgggggggggggaatagaGAAAACTACCTGAAATATAGAAAACTACCGGTACCAAAAGTGAGACCCATGCAGAGGCATAAGTAGGTCAGACATTTGCATCTCATAACCAAAATGTTATACGGTAAAGAAACTGTCGAGCTGTCCTTTAAACTCTAAAAGGTAGTTCAGACGGATGATGTTTCTGTGGGAAGATGCACGGCCGGACTGCGCCAAGATCAAGGTATTTACTGCACTAGTTAGAATTATCATTCAGCTTTTTCCTTCAGCTTTCAAATCACATTTGAGCAGCAAATGTGATCCGAAGCCTGGGAGGCTCGCCAACAAACTGCTGTTAGTCGGTTTTGTAACCATAAAAAAAATTTGTAAAaggagtaaataaataaaaaaccttGAAACAGTGGCAGGTTTTAAAAATAGGCTGCTCAGCCTGTTTTCAGCCAATACGACCTCCAAACTGGCACCAGAGTGGGATTGATCAGCCCGTCAGTCTTCCATAAGCTGCGCTGCGCgtgaacacatgaacacacatggTGGGTCTCTCCGTCTCAGGTCCAGGTCTCCATGGGCACCATGGCCTCCTTGGAGCCGATGGGGGGGAGCAGGTTCTGCTCGCACAGGAACCGGAGAGGGAACTGGACCGCGAAGCCGCGGATCTTCTTCAGCTCTTCTTGAGCCTTGGCCGGGTCCTCCCGGTCCAGGCCCGGCTTGGCCACGTAGCCCTCCAGCTCCACGATGTTTCGCACGTCGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302244 lncRNA downstream 2894 25928639 ~ 25930103 (-) True G223318
TU302240 lncRNA downstream 17248 25915257 ~ 25915749 (-) True G223314
TU302226 lncRNA downstream 36353 25808764 ~ 25896644 (-) True G223303
TU302228 lncRNA downstream 106151 25824362 ~ 25826846 (-) True G223305
TU302220 lncRNA downstream 132304 25799721 ~ 25800693 (-) True G223301
TU302245 lncRNA upstream 2246 25937793 ~ 25939788 (-) True G223319
TU302248 lncRNA upstream 20740 25956287 ~ 25956599 (-) True G223322
TU302255 lncRNA upstream 45913 25981460 ~ 26042864 (-) False G223328
TU302260 lncRNA upstream 49626 25985173 ~ 25997932 (-) True G223331
TU302266 lncRNA upstream 56322 25991869 ~ 25992187 (-) True G223334
XM_039790947.1 mRNA downstream 99057 25817429 ~ 25833940 (-) True mynn
XM_039790605.1 mRNA downstream 120214 25801105 ~ 25812783 (-) False lrrc34
XM_039790611.1 mRNA upstream 165341 26100888 ~ 26110027 (-) True cldn11b
XM_039790127.1 mRNA upstream 174860 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790129.1 mRNA upstream 174860 26110407 ~ 26148020 (-) False si:ch211-230g15.5
XM_039790128.1 mRNA upstream 174860 26110407 ~ 26147104 (-) False si:ch211-230g15.5
XM_039790716.1 mRNA upstream 387946 26323493 ~ 26345733 (-) True rmc1
TU302229 other downstream 98773 25828091 ~ 25834224 (-) False mynn
TU302230 other downstream 99372 25828091 ~ 25833625 (-) False mynn
TU302187 other downstream 194113 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 370457 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 846289 25056593 ~ 25086708 (-) False LOC120552232
TU302261 other upstream 48047 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 106296 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 106296 26041843 ~ 26042864 (-) True G223328
TU302290 other upstream 118972 26054519 ~ 26059062 (-) True G223351
TU302289 other upstream 124450 26059997 ~ 26130122 (-) True G223350

Expression Profile