RNA id: TU302399


Basic Information

Item Value
RNA id TU302399
length 3643
RNA type TUCP
GC content 0.39
exon number 3
gene id G223435
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26471704 ~ 26475911 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACATATTAAATACTGAATTCCTCTCATTCATTTACTAAGAAAATACCAAACATGAGATAGTTTTGACGgtttttcaattttttaaaaagtttttcatGTTTCATGGTCATCAAAGTGAATGTTTTTAGGTTTATTGACAGTTGACACTTTGCCACTTTAGACTCCCGAAACGTTAGATGCTTTTTGACATTTCAAAGACAAGTTAACAGGgaaattgtgcagcttgtatttacattcacaaaagtgctcgttttgccgctgacagactcggattaatattctaagtgtctgacaacattatggaaataatttctaaggaggtcgacctttctgttaaagagtaagatcctttttttgaacttaaaaacatccgcgaaattgcgttcactaaacccaccagactccatgtaaataatcagtcattttagcatcgtaaaatacacttcattcaaagttgacagaaactaaataaaactatgagaagccattttgggtcgtctttccacttctccaaccatcacaactctagttctggttgaaataaacacatagtttactgatttacatgtgagtacatgctggctctatatatgCTAAAATtatagcttttttaaatggagtctggtgggtttagagcttgcgacttcagagccgtttctggttaaacagaaagctCTCAAAGAGgattttaaaggtctatctctgtagggaacCTTTCCATAATGTCGTCAGACACTGAGAATATTAATCTGATTATGTCAGCGGCAACaaaaagcacttttagtggaccaaattgatGATGAACATTTTCCCCCGTACGGTAACATTGTCTGTGGTTGCTGGTTACAGAGTTCAGGCTTAAtgctggaccaatgtcaaagattgttgttcccatcagtcacttagacacaaaaacttAGGAAAATAGGGTTCAGGTTGGAAAATAAATGACGAAATGACCCTGTGTGTTTAAAAACAATCCTTGTTGGTGAAAccaaatttaaatgttttggagGAGGATTTATCTTCCACGTTTGCCGAGCTGTGAatctaaaatctttttttttcttttcagtttttttgagCCTCAGTGACATGGCGGCTTCATCTACTTGCTGGAGTATTTTCCTTAAAAACATGAATCAAAATACTTTGAATTTAACTGACTTTAATATCCCGATAatctgaaagagaaagagagtcaAAAGGGGTAGGAAACGCTCATCagtgatacaaaaaaaaaggaaggatgaaagaaagaaacttCACTTTGGTAGAATAATTTCACATTTCTTCtaacatgtacatttttattttaaagaagtCACGACACAACTTcgcacacaaaataaaacagtccctccagaaaaaggcgactatgcgatcgcataattcaatattttaaaataagcCGCACTTTCGCAAAATaggcggggcttgcatgatttaatAATCcatgcattttcgttgcaaaagagtcccataatatatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctctctgtgtgtgtgtggctctgtaagtgtgtgtgtgtctctctctctctgtgtgtgtgtgtgtggctctgtgtgtttgtgtctctgtgtgtgtgtgtgtgtgtgtgtatgtgtggctctgtgtgtgtgtgtgtgtggctctctgtgtgtgtgtgtgggtgtgtctctgtgtgtgtgtggctctctctgtgtgtgtgtgggtgtgtctgtgtgtgtgtgtgtgtctgtggctctgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtctgtggctctgtgtgtgtgtgtgtgtgtgtgtgtctgtggctctgtgtgtgtgtggctctctgtgtttgtgtgtgtgtgtgtgtgtgtgtggctctgtgtatgtctgtgtgtctctgtctctgtgtgtgtgtgtgcgtgtgtttgtgtagacatttatttactattttattcatatattacgcTACTTTTGTGAAACCAAGATTTTTgttccccgcattttcgttgcaaaaaacgcccataatatatcttagcgaaagttgaaaaatgttgcgtttacttcacacgagagcagccatttagcccctgttgccatgggaacgttatgaagtgacgtaattatgtcatcaaatcacttttttttcctctttttcatctACCTGcagttttttgcaagttcctgcaatttcatcgcataaaattgcataaatatcatatagcatattccatcgcatattttaagaaaacgtgtctttttgcccgcaacaatcacaaaaaaaactccacatttttctggaaggactgataaaAGCACCGCACATGTCGCCACAAACCGCAGAGGCAAGTCGGAAAAGATACTATAACCGGATCACGTGCatgaaaacttaaaataaaattcTGTTCTACCGGAGTGAAGTCTTTCTTTCTGAAATAAAAGTAGAGTATAGTGCTGTGAAGTGAAACACACAGGACGCCAAATCATCACCGTTAACCTCGAGGGCAGAGAAGAAGGGGGAGAGATTGTTTCTATtgtaacttattattattattatgaagattgtatattattgttataagtATTATTACACTGCAAAGAAAGTGACGCACTTGGCCGGTTTTATGCCGAGATATTCAAAGTCAAATTATCTTCaatttaaaattataaaatacttttattttctgtcagaaatcagaaaaaaacaacgACTTGTTAAaaccctctgaggacgaaagatgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctctgtgtgtgtgtctctgtgtgtgtctctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtctctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgcgtgtgtgtttgtgtgtgtgtgtgtgtctgtgtgtgtttgtgtgtggctctgtgtgtttgtgtgtgtgtctctgtgtatgtgtgtgactgtgtgtgtgtctctgtgtgtgtgtgcgtgtgtgtttgtgtgtgtgtctctgtgtgtgtgtgtgtgtctgtgtgtgtttgtgtgtggctctgtgtgtgtgtgtgtgtgtgtctctgtgtatgtgtgtgactgtgtgtgtctctttgtgtgtgtgtggctctgtgtgtgtgtgtctctgcctctgtgtgtgtgtgtgtgtgtgcgtgtttgtgtagacatttatttactattttattcatatattacgcTACTTTTGTGAAACCAAGATTTTTGTAAACTCatttaaacaagacatttgagaaatatttctgctttaaaattaTGTCTTTATGCGTTGCTCTGGGCGTCACTTTACAGAAAgatgagtttgttctgaacattttaatatgaaacacacagggaTCAGTTATAGGCAAAAACCCTTAAAGGGAGAATTTAAGAAGATGTATAAAAAATACggttagacctcagagggttaagaACATGTGCAGGTTGatgattttactttgaaaatatCTTGGTGAACTGTGGAttatttgtaaaacatgaagGCCAGGTTGGTCATGattgtgtgcagtgtgttgGACTCGTCATCAGGGCTACACTAATGTAATGTATTTCCTTTCAATGAATGTATAGAAGTAAACATTTACACCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302400 lncRNA downstream 909 26468422 ~ 26470795 (-) True G223436
TU302401 lncRNA downstream 909 26468422 ~ 26470795 (-) False G223436
TU302421 lncRNA downstream 7488 26433309 ~ 26464216 (-) False G223449
TU302422 lncRNA downstream 7488 26433309 ~ 26464216 (-) False G223449
TU302417 lncRNA downstream 7488 26463293 ~ 26464216 (-) True G223449
TU302454 lncRNA upstream 78942 26554853 ~ 26558519 (-) True G223464
TU302465 lncRNA upstream 117130 26593041 ~ 26658273 (-) True G223471
TU302453 lncRNA upstream 125312 26601223 ~ 26656318 (-) True G223463
TU302458 lncRNA upstream 135346 26611257 ~ 26629018 (-) False G223466
TU302446 lncRNA upstream 138493 26614404 ~ 26631568 (-) False G223462
XM_039790717.1 mRNA downstream 95942 26352631 ~ 26375762 (-) True riok3
XM_039790716.1 mRNA downstream 125971 26323493 ~ 26345733 (-) True rmc1
XM_039790127.1 mRNA downstream 323681 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790721.1 mRNA upstream 8018 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA upstream 8018 26483929 ~ 26502727 (-) False LOC120552560
XM_039790719.1 mRNA upstream 8018 26483929 ~ 26502727 (-) False LOC120552560
XM_039790961.1 mRNA upstream 83524 26559435 ~ 26906332 (-) True LOC120552733
XM_039790722.1 mRNA upstream 469539 26945450 ~ 26968414 (-) True ssr1
unassigned_transcript_1423 other downstream 3872 26467759 ~ 26467832 (-) True trnai-aau_34
unassigned_transcript_1422 other downstream 4484 26467147 ~ 26467220 (-) True trnai-aau_33
unassigned_transcript_1421 other downstream 5194 26466437 ~ 26466510 (-) True trnai-aau_32
unassigned_transcript_1420 other downstream 21788 26449843 ~ 26449916 (-) True trnai-aau_31
unassigned_transcript_1419 other downstream 23945 26447686 ~ 26447759 (-) True trnai-aau_30
TU302432 other upstream 8324 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other upstream 8324 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other upstream 8324 26484235 ~ 26503153 (-) True LOC120552560
TU302546 other upstream 628687 27104598 ~ 27188218 (-) True G223516
TU302573 other upstream 1001355 27477266 ~ 27483161 (-) True G223538

Expression Profile