RNA id: TU302401


Basic Information

Item Value
RNA id TU302401
length 1991
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G223436
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26468422 ~ 26470795 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggttttgatttttttcagtatttatttatttatttgtttgtttttattagtttttaatataaatataaatcttCTTTTTAACATCTTGAGTTTCGTTGTTTTTGGTGCAAacgtgaagaaaaaaaatcagaacCGTACGGAGACAGTTTCATCTTTTAGTGTTTCAACTCTCGTTTCACAATTCATCTCCAAAATATGGACGACATTTAGAGATCAGAGAGATTTAGAGATCAGAGAGATTTAGAGATCAGACATTTAGAGATCAGAGAGATTTAGAGATCAGAGAGATTTAGAGATCAGACATTTAGAGATCAGAGAGATTTAGAGATCAGAGAGATTTAGAGATCAGACATTTAGAGATCAGAGAGATGTAGAGATCAGAGAGATTTAGAGATCAGACATTTAGAGATCAGAGAGATTTAGAGATCAGAGAGATTTAGAGATCAGACATTTAGAGATCAGAGAGATTTAGAGATCAGAGAGATGTAGAGATCAGAGAGATGTAGAGATCAGAGAGATGTAGAGATCAGAGAGATGGTTTTGGGATTCGAGACCCAGAAACTATTCGTGAGGtttgggaaaagaaaagaagaaatctGGCTCTGCGGATAACGTCCGTAACTTTCCCAAAAACATTTCCACCCGTTCAGAAGGAGTCCATGACTGTTGGTACCTTGAACCTGGTCCAAACAGGGTTAACCCAGgctaaagaagaagagaagaggggagaaagagaggaagaacgAGAGAAGAgtagaggaaggagagaagatgagagaaagagaggaaggagagaagaggagagaaagagaggaagaaggagaaaagagaaagagaggaaggagagaagagtagaggaaggagagaagatgagagaaagagaggaaggagagaagaggagagaaagagaggaagagggagagaagagaaagagaggaaggagagaagagtagaggaagaaggagagaagatgagagaaagagaggaaggagagaagaggagagaaagagaggaaggagagaagaggagataaaataagagaaagaggaaagagagaagaggagagaaagagaggaaggagagaagagataaagagaggaagagaggaaggagagaagagataaagagaggaaggagaggagagaaaaggagagaaagagaggaaggagaggagagaaaaggagagaaagagaggaagaaagagaggaaggagcgaagagagaaagagaggaagaaggagagaagagagaaagagaggaagaaagagaggaaggagagataatgagagacagagagaggaaggagaggagcgaaagagagaagaggagagaaaaaggaaggagagaagaaggaGCGTAAGACaggaagaaggagagaaagagagaagaggagagtacgacaggaagaaggagagaaagagagaagaggagagaaagacaggaagaaggagaaaaaaagagagaaccaATCATGACGTTCGGGAGAAGAAGAAAGCTGGCTCTGCAGATTACATCCATGACTGTTGGTACCTTGAACCCGGTCCAAACAGGGCTAACCCGGTCCAAACAAGGCTAACCCGGGTTAAATCCGGGCTAAAACAAGTACTCttatgtttgcttttttttgggcGAAAGGTTGTAACGTCAGTAGTAACTTTTTCATTTCTTCGGTCCGAGCGTTTGATCCTTCGACAGACAATCATTTAGTTCATCCTCACGCACAAAAcggcaaaaacaacaacaaaaaaaactccattaaTCCACCGAGGGAAGGAGCGCCTGGTCCGATAAGTCTGTCTGTCGGTCGGTCAGTTCTTACCGGGTCTGCCATGGTTCCTTTCGGTCTTAAATGGGGCTCAGCGTCTGCCGCTGGTACGCCGTTAGCTCCGGGTGCCACACGTCCACGATGAAGATGAGCCGGTAACGGTCGGCGTCCTGCCAGACCTCGTGCTCGAAGGAGTCGTCGAAGATCAGGACTTTACCTTCCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302421 lncRNA downstream 4206 26433309 ~ 26464216 (-) False G223449
TU302422 lncRNA downstream 4206 26433309 ~ 26464216 (-) False G223449
TU302417 lncRNA downstream 4206 26463293 ~ 26464216 (-) True G223449
TU302429 lncRNA downstream 5377 26461326 ~ 26463045 (-) True G223455
TU302320 lncRNA downstream 361435 26106712 ~ 26106987 (-) True G223371
TU302454 lncRNA upstream 84058 26554853 ~ 26558519 (-) True G223464
TU302465 lncRNA upstream 122246 26593041 ~ 26658273 (-) True G223471
TU302453 lncRNA upstream 130428 26601223 ~ 26656318 (-) True G223463
TU302458 lncRNA upstream 140462 26611257 ~ 26629018 (-) False G223466
TU302446 lncRNA upstream 143609 26614404 ~ 26631568 (-) False G223462
XM_039790717.1 mRNA downstream 92660 26352631 ~ 26375762 (-) True riok3
XM_039790716.1 mRNA downstream 122689 26323493 ~ 26345733 (-) True rmc1
XM_039790127.1 mRNA downstream 320399 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790721.1 mRNA upstream 13134 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA upstream 13134 26483929 ~ 26502727 (-) False LOC120552560
XM_039790719.1 mRNA upstream 13134 26483929 ~ 26502727 (-) False LOC120552560
XM_039790961.1 mRNA upstream 88640 26559435 ~ 26906332 (-) True LOC120552733
XM_039790722.1 mRNA upstream 474655 26945450 ~ 26968414 (-) True ssr1
unassigned_transcript_1423 other downstream 590 26467759 ~ 26467832 (-) True trnai-aau_34
unassigned_transcript_1422 other downstream 1202 26467147 ~ 26467220 (-) True trnai-aau_33
unassigned_transcript_1421 other downstream 1912 26466437 ~ 26466510 (-) True trnai-aau_32
unassigned_transcript_1420 other downstream 18506 26449843 ~ 26449916 (-) True trnai-aau_31
unassigned_transcript_1419 other downstream 20663 26447686 ~ 26447759 (-) True trnai-aau_30
TU302399 other upstream 909 26471704 ~ 26475911 (-) True G223435
TU302432 other upstream 13440 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other upstream 13440 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other upstream 13440 26484235 ~ 26503153 (-) True LOC120552560
TU302546 other upstream 633803 27104598 ~ 27188218 (-) True G223516

Expression Profile