RNA id: TU302421


Basic Information

Item Value
RNA id TU302421
length 486
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G223449
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26433309 ~ 26494229 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacacacacacacacacacacacagagacacacagagacacacacacacacacacagagaaacacagagacacacacacacacacacacacacacaggagacacacacacacacacacacagagaaacacagagacacacacacacacacacacacacacacacacacacacagacacacacacacacagacacacacacagacacacacacacagacacacacacagacacacacacacagagacacacacacacacacacacacacagagacacacacacagagacacacacacacacacagagacacacagagacacacacacagagacacacacacagagacacacacacacacagagacacacacacagacacacagagacacacacacagacacacagagacacacacacagacacacacacacacagacacagacacacacacacacacacagacaacacacacacacacacacatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302320 lncRNA downstream 326322 26106712 ~ 26106987 (-) True G223371
TU302282 lncRNA downstream 346629 26026105 ~ 26086680 (-) True G223348
TU302310 lncRNA downstream 359367 26071089 ~ 26073942 (-) True G223363
TU302255 lncRNA downstream 390445 25981460 ~ 26042864 (-) False G223328
TU302400 lncRNA upstream 4206 26468422 ~ 26470795 (-) True G223436
TU302401 lncRNA upstream 4206 26468422 ~ 26470795 (-) False G223436
TU302454 lncRNA upstream 90637 26554853 ~ 26558519 (-) True G223464
TU302465 lncRNA upstream 128825 26593041 ~ 26658273 (-) True G223471
TU302453 lncRNA upstream 137007 26601223 ~ 26656318 (-) True G223463
XM_039790717.1 mRNA downstream 57547 26352631 ~ 26375762 (-) True riok3
XM_039790716.1 mRNA downstream 87576 26323493 ~ 26345733 (-) True rmc1
XM_039790127.1 mRNA downstream 285286 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790129.1 mRNA downstream 285289 26110407 ~ 26148020 (-) False si:ch211-230g15.5
XM_039790128.1 mRNA downstream 286205 26110407 ~ 26147104 (-) False si:ch211-230g15.5
XM_039790721.1 mRNA upstream 19713 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA upstream 19713 26483929 ~ 26502727 (-) False LOC120552560
XM_039790719.1 mRNA upstream 19713 26483929 ~ 26502727 (-) False LOC120552560
XM_039790961.1 mRNA upstream 95219 26559435 ~ 26906332 (-) True LOC120552733
XM_039790722.1 mRNA upstream 481234 26945450 ~ 26968414 (-) True ssr1
TU302395 other downstream 23952 26404001 ~ 26409357 (-) True G223433
TU302346 other downstream 214985 26216885 ~ 26218324 (-) True G223395
TU302289 other downstream 303187 26059997 ~ 26130122 (-) True G223350
TU302290 other downstream 374247 26054519 ~ 26059062 (-) True G223351
TU302256 other downstream 390445 26041843 ~ 26042864 (-) False G223328
unassigned_transcript_1421 other upstream 2221 26466437 ~ 26466510 (-) True trnai-aau_32
unassigned_transcript_1422 other upstream 2931 26467147 ~ 26467220 (-) True trnai-aau_33
unassigned_transcript_1423 other upstream 3543 26467759 ~ 26467832 (-) True trnai-aau_34
TU302399 other upstream 7488 26471704 ~ 26475911 (-) True G223435
TU302432 other upstream 20019 26484235 ~ 26510127 (-) False LOC120552560

Expression Profile