RNA id: TU302435


Basic Information

Item Value
RNA id TU302435
length 1269
RNA type TUCP
GC content 0.49
exon number 5
gene id LOC120552560
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26483929 ~ 26510127 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagctctctctttctcctgctcCGCTCAGACACCTTCTGTTCTCCTTGTCGGGCGATCAAAACTTTGGAATATTTCTTCTTTGGGATTGTTTTCATCTCTTCGCGCCACCTCTTCGATTCAGTACTGTTATAAACTTTTTGTGAAGTACTTTTTTGGAaagttttaaatacttttttggtgCTTTAATTCGTCTTTtttctagggctgctccctcttagtcgattagtcgactaatcggtcgtttttggtcttagtcaacttagatttctttagtccattagtcatgtttgatgcttttttcatgctgaatgacttatttccaagaaacgtacgagcacatctctggtaaacaagaattaaagtggtgcttttagcatgactctttgtggagaaactcagatttacagatctgtcgattaaatcgactaatcgattagtcgatacaattgagtgttagtcgactaagaatttcttcaatcgagcacagccctacttttTTCAATCTGGTTTTATCTGGTACTTACACATCGTGTGTTCGTCACTTCATAGTCTGaaataaatattctaaattAGTTTTTATGGCGGTTTAGTGTGCAGCACACGGTGTGTCTCTGCCGTCCGGCCTGGTTACTGGCCCGGCTCGGCTCGGCCcggtttttgtttttggggggggtttcGGCTGAGATCGGAGACGGTCCATGCAGCGCTACCGTCATTATGGCTCCTCCTACCCTCCTTCCCCCTCCTCCGCTCCCGTAGAGGAGATCCACgccgaagaggaggaggaggaggaggaggtgttcACTGAAGAGGTCTATGAGGAGGAGGCGGAGCCTCTGATACAGAAGGAGGCGGAGCCTGTGGTGCAGGAGACAGGAGGTGTTAATGGGGAGGAGGTCGCACAGACGAAGGAGGAAGAGCAGCCTGACGTCCAGGAGACAGAGGGGAAGACGACGCCGGTGGAAAGCAAGAATGGAAAGAGGACGGagagaggagcagcagcaggaggaggaggtggagacgcggcagcagcagcaggaggaggctCGAAGTACTCCATGTTCACCTGGTTCGTGGTCCTGGCTCTGCTGGGAGTCTGGAGCTCCGTGGCCGTGGTCTACTTCGATGTCGTGGACTACGACAGCGTCATCGCCAGAGCTAAGGAGTTCCACATGAACTTTTCTGAAGTTTTACAAGGGAAACTGACTGCCTACGACACCGACGGAGACGGAGACTTTGACGTGGAAGATGCTAAAGTTCTGCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302423 lncRNA downstream 7268 26433309 ~ 26476967 (-) False G223449
TU302400 lncRNA downstream 13440 26468422 ~ 26470795 (-) True G223436
TU302401 lncRNA downstream 13440 26468422 ~ 26470795 (-) False G223436
TU302421 lncRNA downstream 20019 26433309 ~ 26464216 (-) False G223449
TU302422 lncRNA downstream 20019 26433309 ~ 26464216 (-) False G223449
TU302454 lncRNA upstream 51700 26554853 ~ 26558519 (-) True G223464
TU302465 lncRNA upstream 89888 26593041 ~ 26658273 (-) True G223471
TU302453 lncRNA upstream 98070 26601223 ~ 26656318 (-) True G223463
TU302458 lncRNA upstream 108104 26611257 ~ 26629018 (-) False G223466
TU302446 lncRNA upstream 111251 26614404 ~ 26631568 (-) False G223462
XM_039790717.1 mRNA downstream 108473 26352631 ~ 26375762 (-) True riok3
XM_039790716.1 mRNA downstream 138502 26323493 ~ 26345733 (-) True rmc1
XM_039790127.1 mRNA downstream 336212 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790961.1 mRNA upstream 56282 26559435 ~ 26906332 (-) True LOC120552733
XM_039790722.1 mRNA upstream 442297 26945450 ~ 26968414 (-) True ssr1
XM_039790724.1 mRNA upstream 442297 26945450 ~ 26968413 (-) False ssr1
XM_039790727.1 mRNA upstream 469694 26972847 ~ 26980874 (-) False LOC120552563
XM_039790728.1 mRNA upstream 469694 26972847 ~ 26980874 (-) False LOC120552563
TU302399 other downstream 8324 26471704 ~ 26475911 (-) True G223435
unassigned_transcript_1423 other downstream 16403 26467759 ~ 26467832 (-) True trnai-aau_34
unassigned_transcript_1422 other downstream 17015 26467147 ~ 26467220 (-) True trnai-aau_33
unassigned_transcript_1421 other downstream 17725 26466437 ~ 26466510 (-) True trnai-aau_32
unassigned_transcript_1420 other downstream 34319 26449843 ~ 26449916 (-) True trnai-aau_31
TU302546 other upstream 601445 27104598 ~ 27188218 (-) True G223516
TU302573 other upstream 974113 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 1137411 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 1176262 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 1191701 27694854 ~ 27700381 (-) False LOC120552596

Expression Profile