RNA id: TU302465


Basic Information

Item Value
RNA id TU302465
length 640
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G223471
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26593041 ~ 26658273 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacaacattatggaaaggatccctccagagatagacctttaaaacctctttgagacctttctgtttaaccagaaacagctctgaagtcgctagctctaaacccaccagactccatttaaaaaagctataattttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctcccccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttaccgtcagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgcatagagccagcatatctccaccagactccatgtaaataatcaggacttttagcgtgtatagagccagcatatttccaccagactccatgtaaataatcaggacttttagcatgtatagagccagcatatctccaccagactccatgtaaataatcaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302454 lncRNA downstream 34522 26554853 ~ 26558519 (-) True G223464
TU302420 lncRNA downstream 98812 26463293 ~ 26494229 (-) False G223449
TU302423 lncRNA downstream 116074 26433309 ~ 26476967 (-) False G223449
TU302400 lncRNA downstream 122246 26468422 ~ 26470795 (-) True G223436
TU302401 lncRNA downstream 122246 26468422 ~ 26470795 (-) False G223436
TU302492 lncRNA upstream 656 26658929 ~ 26681370 (-) True G223483
TU302497 lncRNA upstream 18574 26676847 ~ 26718815 (-) True G223487
TU302500 lncRNA upstream 53507 26711780 ~ 26715763 (-) True G223490
TU302477 lncRNA upstream 79780 26738053 ~ 26747469 (-) True G223475
TU302505 lncRNA upstream 97850 26756123 ~ 26756852 (-) True G223493
XM_039790721.1 mRNA downstream 90314 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA downstream 90314 26483929 ~ 26502727 (-) False LOC120552560
XM_039790719.1 mRNA downstream 90314 26483929 ~ 26502727 (-) False LOC120552560
XM_039790717.1 mRNA downstream 217279 26352631 ~ 26375762 (-) True riok3
XM_039790716.1 mRNA downstream 247308 26323493 ~ 26345733 (-) True rmc1
XM_039790722.1 mRNA upstream 287177 26945450 ~ 26968414 (-) True ssr1
XM_039790724.1 mRNA upstream 287177 26945450 ~ 26968413 (-) False ssr1
XM_039790727.1 mRNA upstream 314574 26972847 ~ 26980874 (-) False LOC120552563
XM_039790728.1 mRNA upstream 314574 26972847 ~ 26980874 (-) False LOC120552563
XM_039790726.1 mRNA upstream 314574 26972847 ~ 26980874 (-) False LOC120552563
TU302432 other downstream 82914 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 82914 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 89888 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 117130 26471704 ~ 26475911 (-) True G223435
unassigned_transcript_1423 other downstream 125209 26467759 ~ 26467832 (-) True trnai-aau_34
TU302546 other upstream 446325 27104598 ~ 27188218 (-) True G223516
TU302573 other upstream 818993 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 982291 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 1021142 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 1036581 27694854 ~ 27700381 (-) False LOC120552596

Expression Profile