RNA id: TU302517


Basic Information

Item Value
RNA id TU302517
length 3460
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC120552561
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26917333 ~ 26929021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCCTCCGACTCCCGGCTGCAGATGAGGAGAAACCGTTTTCTACTGCCGTTTATCTGCTGATGAAACACAATCAAAAGCTGATCGATTTCGACTTGGACCTGGAGCCTTCAGGGGAGAAaCTGGTATGCAAGAGGACGAGCAGTTTTCCCAACCGTCCAGATTTCTAGACTCCAGGCTGAACTCTACAGTTATGTTGCTGCCAAGAGGAATGAATCCATGAAGAGCGGCCCATCGATGGGAAACCCGCTGAGATTCTTTCCTTCTGCTCATGCTGCTCGTGGATGACGTTGTGGAGCGAGAAGAGCGCTACGTTCGTTCAGACCTCCAGCTGGAGATGGAAATCCAAACTGAGCTTTTGCACTTTGATTGTAATCGTGTCTGAATTTCTGCACGTTTTATTTCAATTTAATCTTTTGCGAGTGTTGCTATGACGCTAAAAAACAGAGCAAAGCCGCGAAGATCTTTGacgcttttttcaacgtttttattCTACGGATTTTGGTGTTTCCGACATTTTTGACACTTgccgtttttgtcgccttttctaaagtttttgtcgctgttttcGCCCCGTTTTCTGAGGTTATAGTcgttttttctgacgttttttgctttttccgaagtttttgtcgctttttccgaagtttttgtcgcttttttcaaggtttttgccTCATTTTCTGAGGTTATAgttgctttttctgacgttttttgcttttttcgaagtttttttagcttttttcaaggtttttgccTCGTTTTCTGAGGTTGTAgtcgctttttctgacgtttttttagctttttccgaagtttttgttgcttttttcaaggtttttgccTCGTTTTCTGAGGTTGtagtcactttttctgacgttttttagctttttccgAGGTTTTTGTCGGCATTTCTGacgtttttggcatttttttctctgaaatttttgcctcgtatttcaatgtttttgccgTTTTTATCTgacgtttttggcactttttaagatatttttgtCGCTTATGTGGTGACGTGCAGATTCAGGAGAAGCACACTACTGCAGTgcttacattacatacacaccacatgtagctacatgctaacgtcaGAGAAACCTGTAATCTTGATTGCAGATGTAGTTAATTTCCCCCCAATTTTGGATCACAGGTACGTTTGTTCAGACCTACAGCTGGAGATGGAAATCCAAACTGAGCTTTTGCACTTAGATTGTAACCGTGTCTGAATTTCTGCACGTTTTATTTCAATATAATCTCTTTGCGAGTGTTGCTATGACGCTAAAAACAGAGCTGGCCCGAACCAATGTGGTGCCCTGTGCGAAATctgtttttgtcgcatttttttAACGTTTTAGACGATTGTTGTTGGCCGTTTTTCGAATGATTGTGGCGCTTTTTTCCCTAAATATTTGCCACTTTTTTTGGTGCTTACTTCTTCACTTtgtcgacatttttgtcatctttttcccccgacatttttctgttttgccGATGTCAATTTTTGTCAATACATGCAGACCCGGGACCTccctagatagttggagatATCACCATCATTATACACATCTGCAACATTACTTATCGGtttctatattatatattttatatacggCATTATTCAGCCTCAGTCGTCACATTCTCATTTTTTTAACGTTGAAAACTGAAATCTTTCCGTTTAATTCTGAACACCAAACAGATTCTCTTTTAATATATTGTTAGATAAAGTTTAGATCATATGTTTAACACAACAAAAGGGAAAAATAGCATCTgggttttgtcgttttttttcctctgtatTCTCACGTTGTTTTCTAATTTCTCATACTGTGACATGTTATATAGCTGTATGTTCATACCATTTGTGTTTATGAGTCGAGCTCTGAGGCCTGcactacgaatcaagatcaacatgcccgtgatctctttcagttaccaggcttcacctaacctaacaactgcGTTCACGCATAAGCTGGGTCAcaacggtggttaacaactagttcaatcaaccatcACGGTTTCCCAATGCAGCATAAAAGAGGCAGTGTTTGCACTTtatgaccaatcacaaacatctaccagagctgcatattttatataagaatagtagggctgtcagcattaacgcgttaatcgcgATGCGATTAAGGGCGGAGCATAACGCATTCAttttttaatcgcatgccggcatttattaatttattttagacTTCAGTCGGCTCAGACTGCTACGAGTGCTACTTGCCGATCTGTGGATGAAACCAAATCCCCAAAAAATTACTACAGCTATatgcaataatgacagattcacacatttttcttttgtttacagtaaataaataatatccaaatacaaatcttaaagtcaagttcataaagtaactttctttgcattcatttgattcccaatcaagatacccTGGTTAAGAATCGCTTTCCATTGtcaatatgtacttaaaaacagttctgaaatgcaaaataatagaattttagtCATGTGATAAaatatgcgattaatcgcgattaactatagaaattcagcgattaatcgcgattaaaaaagATTTATCGTTGGACAGCCCTAAAGAAGAGCAAActacacagacacggttttacaggcaaaatgcaatacagtcgctgcttcctaaaacaggaaggaaagctggcaaaaaaacgACGCTGTAAATGCGTTGTAGTGTATGTGGTAGCGATGCTGTAATGTTGTGTGGAGAGGAATctgccgacactgtttcttgattataaaggtttatttacaaccAGGAATTCAGCATAAATTTACAAGCTCTGAAGAGCCTGGAGAGCGACCAGTttcccagattctcaaaagtcactctgaGGTTCTGCTGTTAACACATGATATATCTATTCTTCATAACTTAGGGTGGGATCAATAATTGACCAACGGCTACAAGCCAACTGGCCTTCTTTTCAACATCTTGGGGGCCCCATTGATAAcactttccagatgtttccagagagGTGTCCTCTGAAAAGTAGTGTAAGGTTCATCCGGATCGTCATGCACATAGATAGTTCATATGAATTTCTTTGTTACCAAAAACTTAAGACAAAGTTTATAAAAAGTCTGTTAGAAGTCCAGATACTACAgcgtaaatcacaactcttatcaagatcacttccccatcagtcaggactaagatctgaccataattacacttgtcctttccataaactgtcgttgctttagccttttatttcagttgcaatcctGACAGTGGTAAGCAATCGTGAgcgcaaataaaaaaatataaaaatatgattCAAACCGATGATCGCATCGgagacacacggctcaagaagccgccaaatagccgatatgtaattctcTCCGCTGAAAATCTATGTCTTTCATAAAGATGTtgttggtctctaaatgttttaacttttctgagcgcacctctctctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302472 lncRNA downstream 87591 26811655 ~ 26829742 (-) False LOC120552733
TU302473 lncRNA downstream 105587 26800087 ~ 26811746 (-) False LOC120552733
TU302505 lncRNA downstream 160481 26756123 ~ 26756852 (-) True G223493
TU302477 lncRNA downstream 169864 26738053 ~ 26747469 (-) True G223475
TU302497 lncRNA downstream 198518 26676847 ~ 26718815 (-) True G223487
TU302552 lncRNA upstream 47465 26976478 ~ 26977294 (-) True G223522
TU302533 lncRNA upstream 53771 26982784 ~ 26991750 (-) True G223515
TU302535 lncRNA upstream 53771 26982784 ~ 26991750 (-) False G223515
TU302538 lncRNA upstream 53771 26982784 ~ 26991507 (-) False G223515
TU302542 lncRNA upstream 53771 26982784 ~ 26991507 (-) False G223515
XM_039790961.1 mRNA downstream 11001 26559435 ~ 26906332 (-) True LOC120552733
XM_039790721.1 mRNA downstream 414606 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA downstream 414606 26483929 ~ 26502727 (-) False LOC120552560
XM_039790719.1 mRNA downstream 414606 26483929 ~ 26502727 (-) False LOC120552560
XM_039790717.1 mRNA downstream 541571 26352631 ~ 26375762 (-) True riok3
XM_039790722.1 mRNA upstream 16437 26945450 ~ 26968414 (-) True ssr1
XM_039790724.1 mRNA upstream 16437 26945450 ~ 26968413 (-) False ssr1
XM_039790727.1 mRNA upstream 43834 26972847 ~ 26980874 (-) False LOC120552563
XM_039790728.1 mRNA upstream 43834 26972847 ~ 26980874 (-) False LOC120552563
XM_039790726.1 mRNA upstream 43834 26972847 ~ 26980874 (-) False LOC120552563
TU302432 other downstream 407206 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 407206 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 414180 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 441422 26471704 ~ 26475911 (-) True G223435
unassigned_transcript_1423 other downstream 449501 26467759 ~ 26467832 (-) True trnai-aau_34
TU302546 other upstream 175585 27104598 ~ 27188218 (-) True G223516
TU302573 other upstream 548253 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 711551 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 750402 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 765841 27694854 ~ 27700381 (-) False LOC120552596

Expression Profile