RNA id: TU302552


Basic Information

Item Value
RNA id TU302552
length 248
lncRNA type intronic
GC content 0.46
exon number 2
gene id G223522
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26976478 ~ 26977294 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacaaagacacacactcacacataaacacacacacacagaaacacacacaaacacaaagacacacacacacacaaagacacacacaaacacaaagacacacacgcacacagaaacacacacagacacacacaaagacacgcacacagacgcacacacactgacagaaacacacacacacacacacacacacagacacacacacccccacatgGCTACATTATCTGAGACTTATGTAAATAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638030.1 lncRNA downstream 47457 26920206 ~ 26929021 (-) False LOC120552561
TU302517 lncRNA downstream 47465 26917333 ~ 26929013 (-) True LOC120552561
TU302472 lncRNA downstream 146736 26811655 ~ 26829742 (-) False LOC120552733
TU302473 lncRNA downstream 164732 26800087 ~ 26811746 (-) False LOC120552733
TU302505 lncRNA downstream 219626 26756123 ~ 26756852 (-) True G223493
TU302533 lncRNA upstream 5490 26982784 ~ 26991750 (-) True G223515
TU302535 lncRNA upstream 5490 26982784 ~ 26991750 (-) False G223515
TU302538 lncRNA upstream 5490 26982784 ~ 26991507 (-) False G223515
TU302542 lncRNA upstream 5490 26982784 ~ 26991507 (-) False G223515
TU302548 lncRNA upstream 28029 27005323 ~ 27059504 (-) True G223518
XM_039790722.1 mRNA downstream 8064 26945450 ~ 26968414 (-) True ssr1
XM_039790724.1 mRNA downstream 8065 26945450 ~ 26968413 (-) False ssr1
XM_039790961.1 mRNA downstream 70146 26559435 ~ 26906332 (-) True LOC120552733
XM_039790721.1 mRNA downstream 473751 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA downstream 473751 26483929 ~ 26502727 (-) False LOC120552560
XM_039790732.1 mRNA upstream 10031 26987325 ~ 27054356 (-) False LOC120552564
XM_039790731.1 mRNA upstream 10031 26987325 ~ 27054356 (-) False LOC120552564
XM_039790730.1 mRNA upstream 10031 26987325 ~ 27054356 (-) True LOC120552564
XM_039790733.1 mRNA upstream 10031 26987325 ~ 27054354 (-) False LOC120552564
XM_039790734.1 mRNA upstream 20758 26998052 ~ 27054360 (-) False LOC120552564
TU302432 other downstream 466351 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 466351 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 473325 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 500567 26471704 ~ 26475911 (-) True G223435
unassigned_transcript_1423 other downstream 508646 26467759 ~ 26467832 (-) True trnai-aau_34
TU302546 other upstream 127304 27104598 ~ 27188218 (-) True G223516
TU302573 other upstream 499972 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 663270 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 702121 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 717560 27694854 ~ 27700381 (-) False LOC120552596

Expression Profile