RNA id: TU302571


Basic Information

Item Value
RNA id TU302571
length 2798
lncRNA type read_through
GC content 0.42
exon number 2
gene id G223538
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27157973 ~ 27483161 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACTTACTACTCAACCCAGAGTCatgtttaaattaaaacagaCAACAACCACCATTTATAATATTTTAATCTGCATCACTTTAAACAACAAAATCCCTGTAAACATTACAAAATCAGCACCTGTGTCATCAGAGGATACAAAGTGGTCCTGGTTTGACAAGAAGAGTGAAAAGTTAACGCAGGCGGACATCTAAAACGATAAATAACCTGCAGTCTTTAAACAAGGACAGGGTTAACGTGTTTTTACCATTTTAAGGATCAAATTATGTTCCATTTTGACATTTAAGAAGCTATTTTACCCTCAAACTGATCTTTAAACACTTCTGGAAACCTGTACATACTTCAGAGCTGCGTTGttagcacacaaacaaacaacaacaaaccttTAAGAGTTGCAAACGTTGCCGTTTCTTAAATCATCTTGCACTCAAAACCTTTCCAACATCAGAACATTTTTAATAACTCCACAGGAGATGATTTCACTGAACAACACACGAGTTATATCAGTAAAAGCAGCGGCTGTATGGGTTGTTTTTGGGATCAATCGCTGGTTTAAATGCTGTCACTCCCCCAATCGAATGCATCGACATCGTGAGGATAGAAAAGGCTCATTTGAATCAGCAGTAAGTAGTTCGTGATCTAAAgacgctgacacaccaaccagataATCGCCCGTTGGACactctggcgaggtcggtgactcgagtctgttccaTGCCGTCGGCAGCAGGAGGAGCTGTCGGCgtccattttggccgatttgactcgTTAAATCGGCcagcgggcagtcggactcaatgaccaatctgattggtggagtgctagcccttgactagcgaatcagtgcgcGAGAAAACCGGGGCTGACAAAGCCAGTATCTTCTCATTACTAGCCATCgtattttcttccgttcagcgaTTAATTAAAACAACCATCCTTTTGACTGCTATCAACTAGGGCTGCTCggttatggaaaaaaaatataaatcacgattatttcggtcaatattgaaatcaccataatttaacacgattactcgttgacttctggaaataTGTTGCAATTagtgaacttaaaaaaaagtggaaaaagtcaaataaatcaacagtaaaaaaaacaccacatacaactgtgaaatttgccttaatacttttcctatttaaacttaattttttcattcagaaaagagaaaataggAGTTTActttgcaaaacgtaatgagctaaataattgtttttctcgattattctgtttttgtgatcattgggagccgaaatcataatcccGATAACATttagattaattgcacagccctactatCAACTCACTCTGATGAAAACAACgactgacgacagcgtgctctgtgtttacgaggtctagagagatgttccCTCATTTCCGATAATACAGATTAGCGGTGCATGTGGTTATGGAGACgcattacgtctcgcgcacgcgcagaacgtacgctcaagtcggtgtcgcttcggtgtgttccgacgCACTTTTTGGACCGACTCGGGGAGACGGGAGCCGAaggatcagtccgactgccttttctgcccaCGGTCGGCcgttgggttggtgtgtcagagcctttaaacaactttcattaaaaataaagaacaagaaaaaaaaaaaaaaaagggttcctacacatttgtttgaaatattCACACTTCGGGGGTCACCAGGGTATTGTTACAAGGacatatttgccattttcatGCACATAAAAAGTCACTAAAATCGGAAAAGTAAACTTTTCCTGATCTGGAAAATTCCCAGAGTTGATTTCAAACCGTTCGGGGAACATGTAGGAACCCCGGAGGGAGAGAAGCACCAGGTTTCAGAGTCTCTCAGACATCAACTACAGACATCACAGCACCATGAGACGTCCCTCCGTCTGTCTCTGTGAAGTTTGTACAAAATTACAGGCGTAAAGTAAGAAAAGTAGAGAGTGATGAGGAACACCAGCAGGAAGATGGAGAAGAAGTTAAAAGATGCTGGTATTGCTTTAAGTTGGGCTGATAGTCTGTGTGATTCTTCTTCTAGGCACCAGAACTCACATCAGAAAATAGTCAGAGTCAAAGTGTGATTGTTGTTACGTTACTAAAAGGCTTTTTTAACAAGAGGAACTCTCTGAAAAAACTATAGAGATGATATTTATACTGATTGGACATCACGTAGAGGAGGCAGTACAGTAATTTGAGTTCCTCTAAACGGACGAAAAAGAGTCTGAGAGGATCCTCTGTGGGAGTTATTTTAcaaccagggatgcaccgaatccaggattcggctgaatattgggctttttgacaggaTTGGGTTTCTGCCGAACTGTAAAAACGCGAACTAGGCGCGCTATGCTGGTTGCCGTAGTGACGGCGCcattgattacgggaaggtgtttccgtaggtggagcgttcaatgcagcaggctgtgagaaagtggacatggaactggtgagcagaacaagttgttgtttggcagaactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctgctcaatgctgattggtctggtggtggcgaggaccctaaactatacacaacatggccgctgttacaacatctggtatgaaacatctgaaagaatacgagttgtgcacgaaggaatctccagacagcagccagaatgcagcaacgaaggacagtccctgtttacttcattcatgtgtttactgggttcatggactgaggatgagaggaggattcggtattaggcattcggccgaaccccaaaaatctggattcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302547 lncRNA downstream 9966 27044837 ~ 27148007 (-) True G223517
TU302564 lncRNA downstream 69776 27087733 ~ 27088197 (-) True G223534
TU302548 lncRNA downstream 98469 27005323 ~ 27059504 (-) True G223518
TU302533 lncRNA downstream 166223 26982784 ~ 26991750 (-) True G223515
TU302669 lncRNA upstream 28793 27511954 ~ 27513812 (-) False LOC120552569
TU302663 lncRNA upstream 32799 27515960 ~ 27516378 (-) False rreb1a
TU302664 lncRNA upstream 33700 27516861 ~ 27520982 (-) False rreb1a
TU302666 lncRNA upstream 41422 27524583 ~ 27525439 (-) False rreb1a
TU302674 lncRNA upstream 45239 27528400 ~ 27584765 (-) True G223608
XM_039790962.1 mRNA downstream 28579 27046827 ~ 27129394 (-) True LOC120552734
XM_039790734.1 mRNA downstream 103613 26998052 ~ 27054360 (-) False LOC120552564
XM_039790732.1 mRNA downstream 103617 26987325 ~ 27054356 (-) False LOC120552564
XM_039790740.1 mRNA upstream 7008 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA upstream 7008 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA upstream 7008 27490169 ~ 27504190 (-) False LOC120552569
XM_039790786.1 mRNA upstream 32805 27515966 ~ 27625569 (-) True rreb1a
XM_039790778.1 mRNA upstream 211179 27694340 ~ 27700331 (-) False LOC120552596
TU302432 other downstream 647846 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 647846 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 654820 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 682062 26471704 ~ 26475911 (-) True G223435
unassigned_transcript_1423 other downstream 690141 26467759 ~ 26467832 (-) True trnai-aau_34
TU302721 other upstream 157403 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 196254 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 211693 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 255621 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 267544 27750705 ~ 27754334 (-) True G223665

Expression Profile