RNA id: TU302574


Basic Information

Item Value
RNA id TU302574
length 5771
lncRNA type intronic
GC content 0.42
exon number 2
gene id G223538
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27157973 ~ 27483161 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACTTACTACTCAACCCAGAGTCatgtttaaattaaaacagaCAACAACCACCATTTATAATATTTTAATCTGCATCACTTTAAACAACAAAATCCCTGTAAACATTACAAAATCAGCACCTGTGTCATCAGAGGATACAAAGTGGTCCTGGTTTGACAAGAAGAGTGAAAAGTTAACGCAGGCGGACATCTAAAACGATAAATAACCTGCAGTCTTTAAACAAGGACAGGGTTAACGTGTTTTTACCATTTTAAGGATCAAATTATGTTCCATTTTGACATTTAAGAAGCTATTTTACCCTCAAACTGATCTTTAAACACTTCTGGAAACCTGTACATACTTCAGAGCTGCGTTGttagcacacaaacaaacaacaacaaaccttTAAGAGTTGCAAACGTTGCCGTTTCTTAAATCATCTTGCACTCAAAACCTTTCCAACATCAGAACATTTTTAATAACTCCACAGGAGATGATTTCACTGAACAACACACGAGTTATATCAGTAAAAGCAGCGGCTGTATGGGTTGTTTTTGGGATCAATCGCTGGTTTAAATGCTGTCACTCCCCCAATCGAATGCATCGACATCGTGAGGATAGAAAAGGCTCATTTGAATCAGCAGTAAGTAGTTCGTGATCTAAAgacgctgacacaccaaccagataATCGCCCGTTGGACactctggcgaggtcggtgactcgagtctgttccaTGCCGTCGGCAGCAGGAGGAGCTGTCGGCgtccattttggccgatttgactcgTTAAATCGGCcagcgggcagtcggactcaatgaccaatctgattggtggagtgctagcccttgactagcgaatcagtgcgcGAGAAAACCGGGGCTGACAAAGCCAGTATCTTCTCATTACTAGCCATCgtattttcttccgttcagcgaTTAATTAAAACAACCATCCTTTTGACTGCTATCAACTAGGGCTGCTCggttatggaaaaaaaatataaatcacgattatttcggtcaatattgaaatcaccataatttaacacgattactcgttgacttctggaaataTGTTGCAATTagtgaacttaaaaaaaagtggaaaaagtcaaataaatcaacagtaaaaaaaacaccacatacaactgtgaaatttgccttaatacttttcctatttaaacttaattttttcattcagaaaagagaaaataggAGTTTActttgcaaaacgtaatgagctaaataattgtttttctcgattattctgtttttgtgatcattgggagccgaaatcataatcccGATAACATttagattaattgcacagccctactatCAACTCACTCTGATGAAAACAACgactgacgacagcgtgctctgtgtttacgaggtctagagagatgttccCTCATTTCCGATAATACAGATTAGCGGTGCATGTGGTTATGGAGACgcattacgtctcgcgcacgcgcagaacgtacgctcaagtcggtgtcgcttcggtgtgttccgacgCACTTTTTGGACCGACTCGGGGAGACGGGAGCCGAaggatcagtccgactgccttttctgcccaCGGTCGGCcgttgggttggtgtgtcagagcctttaaacaactttcattaaaaataaagaacaagaaaaaaaaaaaaaaaagggttcctacacatttgtttgaaatattCACACTTCGGGGGTCACCAGGGTATTGTTACAAGGacatatttgccattttcatGCACATAAAAAGTCACTAAAATCGGAAAAGTAAACTTTTCCTGATCTGGAAAATTCCCAGAGTTGATTTCAAACCGTTCGGGGAACATGTAGGAACCCCGGAGGGAGAGAAGCACCAGGTTTCAGAGTCTCTCAGACATCAACTACAGACATCACAGCACCATGAGACGTCCCTCCGTCTGTCTCTGTGAAGTTTGTACAAAATTACAGGCGTAAAGTAAGAAAAGTAGAGAGTGATGAGGAACACCAGCAGGAAGATGGAGAAGAAGTTAAAAGATGCTGGTATTGCTTTAAGTTGGGCTGATAGTCTGTGTGATTCTTCTTCTAGGCACCAGAACTCACATCAGAAAATAGTCAGAGTCAAAGTGTGATTGTTGTTACGTTACTAAAAGGCTTTTTTAACAAGAGGAACTCTCTGAAAAAACTATAGAGATGATATTTATACTGATTGGACATCACGTAGAGGAGGCAGTACAGTAATTTGAGTTCCTCTAAACGGACGAAAAAGAGTCTGAGAGGATCCTCTGTGGGAGTTATTTTAcaaccagggatgcaccgaatccaggattcggctgaatattgggctttttgacaggaTTGGGTTTCTGCCGAACTGTAAAAACGCGAACTAGGCGCGCTATGCTGGTTGCCGTAGTGACGGCGCcattgattacgggaaggtgtttacgtaggtggagcgttcaatgcagcaggctgtgagaaagtggacatggaactggtgagcagaacaagttgttgtttggcagaactttcagtcaaaagaaggccgttcaagtccagctacatgttcaatctgctcaatgctgattggtctggtggtggcgaggaccctaaactatacacaacatggccgctgttacaacatctggtaccAAACATCTGGAAGAATAcaagttgtgcacgaaggaatctccagacagcagccagaatgcagcaacttcaggtacggcaaaggaaggacagtcccggCTAAAAACTTAAGTTAACCAGACGAAGGATTCTGTATTGggtttcggattcggcagaatcttaaccagtggattcggtattcagccgaacccccaaaaatctggattcggtgcatccctactctgaatggaggttaaaaaaaagaaaaagtcagagAGGATCCTCTGTGggagttattattattattatttttttttttacaacatcaTGCATAAAGTTAAAAGACGCTGATCTACAGACGGGACTGTTGACTGTTCTGTAAAAAAGGACTCAAGGCACAGCAGAGGGGTTAAACATCTACAAACATCTCAGGACTATTTAACATTTTAGCAAAGGGTTCTCGTCGCACTCTCCCCCGCGCTACACTCGTACGCAAGCCGATGTGTCCACTCGGTTCAGCAGCTTTTAGCTGCACATCCCGAAAACTCCTGTTCAATTAAATCAATTATCTGCAATAAATCAGTTCACCGGAATAATATTCTAAACATTATTGTAGTTCTAGCAACAATTTGCAGACTATTACGGAAGCCAGCTCTAGCTTGCTACAGTTAACTTGGAATGAAAACAAACTGGACCGACCCAAACGAGAAGCACAGACGTAGAAAACAAACTGGACCGACCCAAACGAGAAGCACAGACGTAGAAAACAAACTGGACCGACCCAAAACGAGAAGCACAGACGTAGAAAACAAACTGCTCCGACCCAAAACGAGAAGCACAGACATAGAAAACAAACTGGACCGACCCAAAACGAGAAGCACAGACATAGAAAACAAACTGGACCGACCCAAAACGAGAAGCACAGACGCAGAAAACAAACTGGACCGACCCAAAACGAGAAGCACAGACGCAGAAAACAAACTGGACCGAGTCGACCGGTGCGAGTAGAGAGACGACGGGACAAACAGCAGAGCGGAGGAGGAGAATAGGACTGAAAACCTTCATCGGTATCCACGTGGTTTTGGTAAAGTGTGAAGCGCCGCTCACTGGAGGAAAGAAGCAAGTGTTTCACGACAGGAAACTCAAACTACAGCCAGACAGGAAACAGTTCAACGGGTTTCTCTGGCGGGTTTAGTTTCCCGTCCCGGTGAAGTAGCTGCTGGTTCCGGTTTTGGGTTTTCACGTTAGCACCTAAAAGAAGAGGCAGCGTCACAAAGCAGAGTCATCTCCACAAACACCAACGGTTCATTTCCATTTGAtctatttaacccttgtgtcgtcTTCCTGTTCACCATGAAACGTTTAGTTttctggtcaaaagttttaattTCAACTTTatggtcgtctttttcgacacttttcccaatgtttttgtcacttttttctatgttttttgttgtttttcccccACGTTCAAGCATTTTactcactttttcagttttttttgtcactttttggctAATGTTTTCCTgggctttttgactttttttttttttttttttttttaaaagcttttccCAACATGtcacttttattttcaatgttaattttttgctatatttttttaaatcctataAAATTAAATCAAAACAACCAAATTCAATGAACGTAATGAACTGATCCTTTATATTAttgtgaagagcattgtatggaaccatccacgttactttTTCCCGATGTTTGTCGATTTCTTTCTgcacttaaaaaagaaaaaaaaattaaaatgctataaaaaacccaaattcaatgaaagtagtgaactgataatttatgttacttgtgaagagcgttgtatggaaccatccacgttactttTTACTAACcgtttggttaaaagaaacccaaatttcggaCCCGAAGACAACTCCAAAATATGCTTTAGTATAAAAGTTTGTTATCAATAAATCTTTCAGAAAACAGAGTCTTGGGCTGCAACTAGTAATGGTTTTAATTACAGATTAATCCGCATTATTCTTAAATGTTTGACTTAAGTAATAATAAACCAAATCTGAATTGTTGCTAATTGACTTAATTGATCCTTTCAGCTCTAACTTGTTTAATAACTGTGAATGTTTGTATCAAAACTCGACTGTGTGGCAACATCCCTCCGATCTCACACACAGGAACTACCAAAGACTGCTTGGAAACCAAATGCCAAAAATGATCCTCCGTGAACGGCAGGCCAGGAATTATACAACACAAGCGCTTTGCCAAAGTCCCAGAAAACAGCTCTATGTTCATTCTGTTAGCAGACACATGAAAGAGCATCGAGGCGCCAATCCAGATTTTCTTGACTTAGCTGCAGACCCTGGTGACCCATGTGGTCGACCAGGCATCAGGCACAGGTGGCCGACCGTGGCAACATCCTCCGATTTCACACGCAGGAACTACCAAAGACGGCTTGGAAACCAAATGccaaaaaagttgtaaaaatcTGTGTTGCTTATTGGTGTGACGCTGCTTTGTGAACGGCCTCCCtgttttacagacagacagtgatcTGGCACTCGGAGGAGATTGCGGCTGGTTCAGTTCACACAGTTTAAAAACACAACGCGacaacggacacacacacacacacacagtccagaCGGTCGTGTGTGAAAGCGGCTGGTGGAGGAGTTCGGTCCCTGAAGCATGAATTGAAAAGCTAGTTTTTAAACAAACGATCATTGGTTCGTCTCCTATTTAAAACACGACACAAACAAGAGTCAGTTTGTCGGTGATGTGCACTTCCAGCTGAGGAAAGATTTACAGAAGAGGAAGATTTGTTCACAGGAGAAAAATCACAAGACGAAAGAGAAACATCTGAAAAGtacttgaaaaaacaaaagatcaaggtgacaaaaaaaaacaacaacctaaaaagcatcaaaattcAGCTTCAAATATTCCCAGTTTTCCTGAAGCTTTTAAACATTGTGACAAGTCGTCTGGGTTTCCTGAAGTgacagtgtgtttgtttgtgtttgagtgTAAGGCCTTTGTGTCGTTGATCCACAGGAGGTAGAAGTCCGAGTCAGGCGAGCTCCATCTCCCGCTCGATCCCAACGTACTTCAGGGCGTCAGCCTGGCTGTACCtgccacacaaaaacacacaaacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302648 lncRNA downstream 25273 27424729 ~ 27451993 (-) True G223587
TU302645 lncRNA downstream 38396 27422418 ~ 27438870 (-) True G223585
TU302638 lncRNA downstream 112195 27360474 ~ 27365071 (-) False G223579
TU302635 lncRNA downstream 112195 27362364 ~ 27365071 (-) False G223579
TU302630 lncRNA downstream 112195 27364353 ~ 27365071 (-) True G223579
TU302669 lncRNA upstream 28793 27511954 ~ 27513812 (-) False LOC120552569
TU302663 lncRNA upstream 32799 27515960 ~ 27516378 (-) False rreb1a
TU302664 lncRNA upstream 33700 27516861 ~ 27520982 (-) False rreb1a
TU302666 lncRNA upstream 41422 27524583 ~ 27525439 (-) False rreb1a
TU302674 lncRNA upstream 45239 27528400 ~ 27584765 (-) True G223608
XM_039790775.1 mRNA downstream 164901 27310012 ~ 27312365 (-) True LOC120552593
XM_039790772.1 mRNA downstream 252274 27223754 ~ 27224992 (-) True LOC120552591
XM_039790757.1 mRNA downstream 272113 27195330 ~ 27205153 (-) False LOC120552579
XM_039790756.1 mRNA downstream 272113 27199401 ~ 27205153 (-) True LOC120552579
XM_039790963.1 mRNA downstream 287722 27136771 ~ 27189544 (-) True LOC120552735
XM_039790740.1 mRNA upstream 7008 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA upstream 7008 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA upstream 7008 27490169 ~ 27504190 (-) False LOC120552569
XM_039790786.1 mRNA upstream 32805 27515966 ~ 27625569 (-) True rreb1a
XM_039790778.1 mRNA upstream 211179 27694340 ~ 27700331 (-) False LOC120552596
TU302546 other downstream 289048 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 967139 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 967139 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 974113 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 1001355 26471704 ~ 26475911 (-) True G223435
TU302721 other upstream 157403 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 196254 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 211693 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 255621 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 267544 27750705 ~ 27754334 (-) True G223665

Expression Profile