RNA id: TU302664


Basic Information

Item Value
RNA id TU302664
length 4122
lncRNA type read_through
GC content 0.42
exon number 1
gene id rreb1a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27515960 ~ 27625569 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGACATTTAGGTGTAGGGAGGGGAATTCTTGTTttgtggatttctttttttataactgAACAAATCAatttttcttgtgtgtgtgcgtacgtgtgtgtgcgaATGTGTGTGACTCCCTCCTGTCTCTCATCATCGCCCCCCCTAGTGTTCATTTAGGGTCTATTACAGGGCCTCCAGTGTGCTAACGTATGTCGCCGCTAACGCGTTACCCAGGTTCAGTATACCTCAACTTCTGCTTCTTAACTGCAACCATTAAAACAACAGATGAGCAGCTCTGTAGGCAACCCTTTAAATCATGTCTTCCTAAACAGGGCTAGCAAGGGGCTAATTCGTTGCTAGCCTGGTTTCCACTGTGGGCCAAATCAGAGCTGGCCAGGGCTAAATCATCAGCGTGGCTAGCAAAGGCTAACTTAACTAAGTCGTTACTGGCGTGGCCTCTGCAAAGGCCCAAACTAACCAAGCAGCTAACCAATGCTAACTCTGTATCAGCAACACTGTAATGGACCGCAAAGTCATTACTACACACAGGAATATTAGCCTGTGATAGCTTAACAGACATCAGCAGACAGAGTCAAACAAAAGCTAACTAGGGCTTACTGACTAAACCAGACAAAGTTAACCCAGCTACCAATGCCTTAATTTGCTTAATGTCTCTCGTACGCGTTATTGTGGGtcccacgtaacttctaggTAAGTCCGGTTGGTTGgggcgtgggttccataataacgcgtcTCGTACGGCCAGTTAGCCCTAGCTGGCGATTATCGTTAGCCTTAGCTTCATGCAGGGGACCCACTACGTTTAAAACACATGCTAGCTATGGCTAGCTGAGCAGACACCTTAACCAAGCTAACAGTGGATTAGCTCAGTTAGCTTGTTTGCTATGGTCAGTTAGCTGTAGCTatctttaacctttttttttcctgagatTCATTTAGTGGTGTCGAAGACTTCAACCACAGGGTAGAAACACATGCTAGCTGTGGCTAACTGACCAGACCAGACATCGCTAAGTTGGTTAACGGCATTTTGAGCTAATAGCAGGTGTAGCTAGTCTCCTTCCAGTATTATCTTAGTATCTTGAGTTGGCCCTGGAGCGCTTTGGTACCGTTTTGTCCTTATTTAGCCCGGTCTTCTCCTATGGGAAAAGCAATTTGAGGACAAACTGAATTTGGCGGTAGAGACAATCAGTTATTTCCctgattttttttcaaggtaAATCCCTCTGTGGAATCTCAGTAGATTTCCAGAAGGAGCTAGATgacaggatggatggatggatggatggatggatggatggagggtaggctggatggatgggtaggttgtgggggtgggggtgtgttcCTGAACTGTATTACCctgctgcacacacaaacaaaacacaaagggCTAATTCCACCCCCTCGCACCAACCCAACCGGACATTTCCACAACAGAAAACAGGCGGTGAAGTTCTGGTCACTTATTGATccttacacatatatatatatatatatatatatatcacaacCAGAGGGGAcgggtagtgtgtgtgtgcgtgtgcattgTCTTTGTCGTGTGAAGATGAATATAGCTAATTTTTCTTCTTGTAAATTTacgttttctgtttttttttttttttttttaatatatatatatatatcaaccaACCTCATAATCAAAAACGAATCGAACCTCAGTGGCTCATAACGGAACTGTAAAGCAGCGACGGGCGGACATTTAGTCGGTCCAAATGAAAATATTGAACAACCACAactggactgactgactgactgactggacGCTGCTGTGAACTGGCACTAACAACTTTccaaaactactactactacttctactactagtactactacggTGGAATATCGCGACACAATCAAgagaagagagcgagagagtttcccacggggtttttttttttcaggactcTAAAAGTATGGAGTCCCAGCTCTTAGCAGGACTGTGTTTTGAAGTATAATTTCACTTTGAAGCAATCAATGCAGAATAAAATATCATTTTCTCCAAATCTAGAGCGCTGTGAACTGTGTTGTGGCTCTTCAATCCAGTCCGAATGTACCCGCAAAGTGTAAAAGCTAGGGAGGAGCTGAAAATGAAATAGATTTTATAATGCAGGATGAGCATCTCTGTAATGAAAATGCTTTCAGGGGTTTCATGTTTGCAGTTTCACGGTGACAAGAACGCTATAGATTTTGGTCTGAATTGAAAATGGCTGCTGTTAACTTACTAGCAACCCAAAATGTCCTCACAACTCACTGTGTGTAGTCTTCAGCAGCGAAGGATTGAGTTCCAAAACATGGACATTGATTGGCAGAAATATTCAGGatgtcctttttaaaaaaaaataaaaaaaataaaagattttaacAGTTTTAGTGCCTTGTAAAATACTTGATGCAAGAAGCTTGGTGACTTAAATTAGAGACTGACTCGCCAGATTAGTTGGATAGCCAGAGCGAGTCAGTTACAATGTTTGTGACTTTACAGTCTGACCTGAAGTAGCTACCTTGCTAACTGTCATTTATTAATTTGGAAGCTAACGGGACGATAAGTTGTCTTAAGCGCTGTCCTCAACTAAAGAAACTGTTACGTAGTCGCCTTACACTCAGACGTTTTTGGCGAAttgttgatttaatcgacagatctggaGAAAAAAACGGAGTTTCTCCAAAAAAGAAAGATGTTTACCAGAGATTTGCTCTCACGTTTGTTGGAAATAAGTCACTGACCGTGAAAACAACCTAAAACGTGATTAAGCGACTAAAGAAATCATAGTTGAGTAAGACCCAAACGCTCTAAAGTTCACACAACTTACTTCAGAAAGGTTTTCGTACCATTAAATCTTGATTCCGTTTTTGCGGAGCAGTTTATACTCGACATGAGGagggtttttgaaaaaaaatacaactaaGTTATGCTACTGTACATAGCTGAGCGTCTATTGCTCAGTGGCCCAAATGTTCAACCAGTTTAAAGTCTCGCTGCATGTCAAATGTCCACCAAAGTTGGAACGAATTAACTCGAGCGAATCGACCGATCGACAAATCTGTTTGAAATGAATTGATTTCGCAGCAGTACGAACATTAATATGAAGTGCCATTGGTACATGGTAAAACATGAGATTTTGGTTAAATATTCCAGCATGTTGAAGACTGCTAATTTAGGGAAACGGGGCTCCTTTTCAAAGATCTTTGGGACCTTGGTAAAGCGCTTGTGTGTTGTATAATTCCTGGCCTGCCATTCACAGAGGGTCATTTTCGGCATTTGGCTTCCGAGCCGTCTTTGGTAGTTCCTGCGTGTGAGATGGGAGGGATGTTGCACCTCAGTCATTAAAATATCTGGATTGGCGCctcaatgtatttatttatatttggaaaaacatagaaaataaaaaccgCTTAATCACGAAACCCCGAAAAACAAAATCTGTTCTTAGGCTTCGGCTGAACGGCAAAAGTCTTTGAATTATTCTGGATTACGTTGGAATTATGAGCTATAAATTTCGacttttgatgtgttttttttttttttaaactgtttataTCGGTGTAgaaactctctttctctctctcgacAGTTTGATGTTTTGTCAGCTCTATCTTTACACCCCTCTCCCTCGAGAGCGTGCGTTAATGTACGTctgacttgtgtgtgtgcgcgcttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgcgtgcgtgttcgTGCACGGCCATATGAATACTGGACTTCCATTCGAATGCACGTggactgtttttaaatgtatttatttggagcccaggtgtgtgtgtgtctgtgtgtgtgtgtgggtgcgagTTAGTTTCTACAATGACTTGAGAAGAAGCCATGTATTAAAAATATCACATTTATGCTGCAGAACTGTTTTGAGGAACTGATGGTTTGTGTTGTGGACTAACCGGCTCGCCGTAGGTGTGCGGCTCGTCGCGTCACGTCGGGGGTGCAAATCGGACTAGCAATAAGAATCCCTCTGAATCCAAAAAGCTTTATGTAGATCTCCTGTATATGAGAACGAGACTCATCGTCTGGGTCTCTTGGTTCTGTTGTTAGTTTGGCAgagaaatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302663 lncRNA downstream 483 27515960 ~ 27516378 (-) False rreb1a
TU302669 lncRNA downstream 3049 27511954 ~ 27513812 (-) False LOC120552569
TU302568 lncRNA downstream 33700 27477266 ~ 27483161 (-) False G223538
TU302572 lncRNA downstream 33700 27477266 ~ 27483161 (-) False G223538
TU302574 lncRNA downstream 33700 27477266 ~ 27483161 (-) False G223538
TU302666 lncRNA upstream 3601 27524583 ~ 27525439 (-) False rreb1a
TU302674 lncRNA upstream 7418 27528400 ~ 27584765 (-) True G223608
TU302675 lncRNA upstream 11761 27532743 ~ 27592465 (-) True G223609
TU302682 lncRNA upstream 27263 27548245 ~ 27548734 (-) True G223613
TU302671 lncRNA upstream 40754 27561736 ~ 27579199 (-) False G223607
XM_039790740.1 mRNA downstream 1935 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA downstream 3034 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA downstream 12671 27490169 ~ 27504190 (-) False LOC120552569
XM_039790775.1 mRNA downstream 204496 27310012 ~ 27312365 (-) True LOC120552593
XM_039790772.1 mRNA downstream 291869 27223754 ~ 27224992 (-) True LOC120552591
XM_039790778.1 mRNA upstream 173358 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA upstream 173358 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA upstream 173358 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA upstream 173558 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA upstream 174856 27695838 ~ 27700331 (-) False LOC120552596
TU302573 other downstream 33700 27477266 ~ 27483161 (-) True G223538
TU302546 other downstream 328643 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 1006734 26484235 ~ 26510127 (-) False LOC120552560
TU302721 other upstream 119582 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 158433 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 173872 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 217800 27738782 ~ 27739972 (-) True G223645
TU302775 other upstream 229723 27750705 ~ 27754334 (-) True G223665

Expression Profile